miRNA display CGI


Results 21 - 40 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29492 3' -57.6 NC_006151.1 + 11367 0.72 0.47104
Target:  5'- aCCGcgcgcUCCGCUCGccgccucuuccccccUCCuCCGCCGCCGCc -3'
miRNA:   3'- aGGU-----AGGUGAGU---------------AGG-GGUGGUGGCGu -5'
29492 3' -57.6 NC_006151.1 + 142926 0.72 0.476656
Target:  5'- aCCga-CAC-CGUCCCCACCACaCGCGc -3'
miRNA:   3'- aGGuagGUGaGUAGGGGUGGUG-GCGU- -5'
29492 3' -57.6 NC_006151.1 + 12640 0.72 0.480417
Target:  5'- uUCCc-CCACUCcucccacaccagcCCCCGCCGCCGCGg -3'
miRNA:   3'- -AGGuaGGUGAGua-----------GGGGUGGUGGCGU- -5'
29492 3' -57.6 NC_006151.1 + 93159 0.72 0.486087
Target:  5'- gCCGUCCccccGC-CGUCCCC-CCGCCGUc -3'
miRNA:   3'- aGGUAGG----UGaGUAGGGGuGGUGGCGu -5'
29492 3' -57.6 NC_006151.1 + 12724 0.72 0.486087
Target:  5'- gCCAUucaucgccCCGCUCAUCCgucuUCAUCGCCGCGg -3'
miRNA:   3'- aGGUA--------GGUGAGUAGG----GGUGGUGGCGU- -5'
29492 3' -57.6 NC_006151.1 + 93126 0.72 0.486087
Target:  5'- gCCGUCCccccGC-CGUCCCC-CCGCCGUc -3'
miRNA:   3'- aGGUAGG----UGaGUAGGGGuGGUGGCGu -5'
29492 3' -57.6 NC_006151.1 + 93093 0.72 0.486087
Target:  5'- gCCGUCCccccGC-CGUCCCC-CCGCCGUc -3'
miRNA:   3'- aGGUAGG----UGaGUAGGGGuGGUGGCGu -5'
29492 3' -57.6 NC_006151.1 + 108251 0.72 0.50232
Target:  5'- aCCGUCUGCUCAgacuacgcUCCCCaggcccgccccuccACCACCGUc -3'
miRNA:   3'- aGGUAGGUGAGU--------AGGGG--------------UGGUGGCGu -5'
29492 3' -57.6 NC_006151.1 + 36110 0.72 0.50521
Target:  5'- gCCGaggCCGC-CGUCCUCGCgGCCGCGg -3'
miRNA:   3'- aGGUa--GGUGaGUAGGGGUGgUGGCGU- -5'
29492 3' -57.6 NC_006151.1 + 87371 0.72 0.50521
Target:  5'- cCCGUCgCGCaCGUCCCCGCCcagguggucCCGCAg -3'
miRNA:   3'- aGGUAG-GUGaGUAGGGGUGGu--------GGCGU- -5'
29492 3' -57.6 NC_006151.1 + 12814 0.71 0.544365
Target:  5'- cUCCgcGUCCcCUC-UCCCCGCCGCCccccGCGg -3'
miRNA:   3'- -AGG--UAGGuGAGuAGGGGUGGUGG----CGU- -5'
29492 3' -57.6 NC_006151.1 + 25739 0.71 0.554314
Target:  5'- cUCCGUCCuuuCUC-UCCCU-CCACCGUc -3'
miRNA:   3'- -AGGUAGGu--GAGuAGGGGuGGUGGCGu -5'
29492 3' -57.6 NC_006151.1 + 71589 0.71 0.564315
Target:  5'- cUCCGcgggcgCCGCgUCGUCacaccUCCACCACCGCGg -3'
miRNA:   3'- -AGGUa-----GGUG-AGUAG-----GGGUGGUGGCGU- -5'
29492 3' -57.6 NC_006151.1 + 29942 0.71 0.564315
Target:  5'- aUCCAUCCAuCUC-UCCUgGCCgagcucggACCGCGg -3'
miRNA:   3'- -AGGUAGGU-GAGuAGGGgUGG--------UGGCGU- -5'
29492 3' -57.6 NC_006151.1 + 37736 0.71 0.564315
Target:  5'- cCCAggacCCGCUCugggCCCUGCCGCaCGCGg -3'
miRNA:   3'- aGGUa---GGUGAGua--GGGGUGGUG-GCGU- -5'
29492 3' -57.6 NC_006151.1 + 12275 0.71 0.574364
Target:  5'- gUCCAggCCGCgggccCAUUCaCCAUCGCCGCGg -3'
miRNA:   3'- -AGGUa-GGUGa----GUAGG-GGUGGUGGCGU- -5'
29492 3' -57.6 NC_006151.1 + 135592 0.71 0.574364
Target:  5'- gUUCGUCCggcgGCUCAUaagcccUCCCACgGCCGCGg -3'
miRNA:   3'- -AGGUAGG----UGAGUA------GGGGUGgUGGCGU- -5'
29492 3' -57.6 NC_006151.1 + 109590 0.7 0.584454
Target:  5'- gCCcgCCcgcGCUCuucaCCCCGCCGCCGUc -3'
miRNA:   3'- aGGuaGG---UGAGua--GGGGUGGUGGCGu -5'
29492 3' -57.6 NC_006151.1 + 37002 0.7 0.584454
Target:  5'- gCCcUCCGCccccCGggcCCCCGCCGCCGCc -3'
miRNA:   3'- aGGuAGGUGa---GUa--GGGGUGGUGGCGu -5'
29492 3' -57.6 NC_006151.1 + 127782 0.7 0.594578
Target:  5'- gCCcUCCccCUC--CCCCGCCGCCGCGc -3'
miRNA:   3'- aGGuAGGu-GAGuaGGGGUGGUGGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.