miRNA display CGI


Results 21 - 40 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29492 3' -57.6 NC_006151.1 + 14617 0.66 0.827118
Target:  5'- aUCCAUCCAgcCAcCCCCACCcgucggggcgGCCGg- -3'
miRNA:   3'- -AGGUAGGUgaGUaGGGGUGG----------UGGCgu -5'
29492 3' -57.6 NC_006151.1 + 14793 0.67 0.801147
Target:  5'- aCCccCCGCUCGaccgcccgCCCCcgacCCACCGCGu -3'
miRNA:   3'- aGGuaGGUGAGUa-------GGGGu---GGUGGCGU- -5'
29492 3' -57.6 NC_006151.1 + 18722 0.76 0.317881
Target:  5'- gCCGUCCACguagaucgCGUCgUCGCCGCCGCc -3'
miRNA:   3'- aGGUAGGUGa-------GUAGgGGUGGUGGCGu -5'
29492 3' -57.6 NC_006151.1 + 24995 0.7 0.625084
Target:  5'- cCCGUCaucgucgucCUCGUCCCCGCUGCUGUc -3'
miRNA:   3'- aGGUAGgu-------GAGUAGGGGUGGUGGCGu -5'
29492 3' -57.6 NC_006151.1 + 25436 0.66 0.843566
Target:  5'- cCCGUCa--UCccUCCCCGCgGCCGCc -3'
miRNA:   3'- aGGUAGgugAGu-AGGGGUGgUGGCGu -5'
29492 3' -57.6 NC_006151.1 + 25739 0.71 0.554314
Target:  5'- cUCCGUCCuuuCUC-UCCCU-CCACCGUc -3'
miRNA:   3'- -AGGUAGGu--GAGuAGGGGuGGUGGCGu -5'
29492 3' -57.6 NC_006151.1 + 25771 0.69 0.686021
Target:  5'- cCCAUcCCACUCcccUCuCCCuCCACCGUc -3'
miRNA:   3'- aGGUA-GGUGAGu--AG-GGGuGGUGGCGu -5'
29492 3' -57.6 NC_006151.1 + 25806 0.69 0.686021
Target:  5'- cCCAUcCCACUCcccUCuCCCuCCACCGUc -3'
miRNA:   3'- aGGUA-GGUGAGu--AG-GGGuGGUGGCGu -5'
29492 3' -57.6 NC_006151.1 + 25841 0.69 0.686021
Target:  5'- cCCAUcCCACUCcccUCuCCCuCCACCGUc -3'
miRNA:   3'- aGGUA-GGUGAGu--AG-GGGuGGUGGCGu -5'
29492 3' -57.6 NC_006151.1 + 25876 0.69 0.686021
Target:  5'- cCCAUcCCACUCcccUCuCCCuCCACCGUc -3'
miRNA:   3'- aGGUA-GGUGAGu--AG-GGGuGGUGGCGu -5'
29492 3' -57.6 NC_006151.1 + 25911 0.69 0.686021
Target:  5'- cCCAUcCCACUCcccUCuCCCuCCACCGUc -3'
miRNA:   3'- aGGUA-GGUGAGu--AG-GGGuGGUGGCGu -5'
29492 3' -57.6 NC_006151.1 + 25980 0.69 0.686021
Target:  5'- cCCAUcCCACUCcccUCuCCCuCCACCGUc -3'
miRNA:   3'- aGGUA-GGUGAGu--AG-GGGuGGUGGCGu -5'
29492 3' -57.6 NC_006151.1 + 26015 0.69 0.686021
Target:  5'- cCCAUcCCACUCcccUCuCCCuCCACCGUc -3'
miRNA:   3'- aGGUA-GGUGAGu--AG-GGGuGGUGGCGu -5'
29492 3' -57.6 NC_006151.1 + 26050 0.69 0.686021
Target:  5'- cCCAUcCCACUCcccUCuCCCuCCACCGUc -3'
miRNA:   3'- aGGUA-GGUGAGu--AG-GGGuGGUGGCGu -5'
29492 3' -57.6 NC_006151.1 + 26085 0.69 0.686021
Target:  5'- cCCAUcCCACUCcccUCuCCCuCCACCGUc -3'
miRNA:   3'- aGGUA-GGUGAGu--AG-GGGuGGUGGCGu -5'
29492 3' -57.6 NC_006151.1 + 26120 0.69 0.686021
Target:  5'- cCCAUcCCACUCcccUCuCCCuCCACCGUc -3'
miRNA:   3'- aGGUA-GGUGAGu--AG-GGGuGGUGGCGu -5'
29492 3' -57.6 NC_006151.1 + 26482 0.68 0.735657
Target:  5'- cUCGUCCucCUCGUCCUCuCCAUCGUc -3'
miRNA:   3'- aGGUAGGu-GAGUAGGGGuGGUGGCGu -5'
29492 3' -57.6 NC_006151.1 + 29942 0.71 0.564315
Target:  5'- aUCCAUCCAuCUC-UCCUgGCCgagcucggACCGCGg -3'
miRNA:   3'- -AGGUAGGU-GAGuAGGGgUGG--------UGGCGU- -5'
29492 3' -57.6 NC_006151.1 + 30544 0.67 0.792177
Target:  5'- cUCCccCCuCUCGUUCCgCGCCGCaCGCGc -3'
miRNA:   3'- -AGGuaGGuGAGUAGGG-GUGGUG-GCGU- -5'
29492 3' -57.6 NC_006151.1 + 31781 0.66 0.843566
Target:  5'- gCCGggCgGCUCuccUCCuucaCCGCCGCCGCGu -3'
miRNA:   3'- aGGUa-GgUGAGu--AGG----GGUGGUGGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.