miRNA display CGI


Results 1 - 20 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29492 3' -57.6 NC_006151.1 + 876 0.68 0.716007
Target:  5'- uUCCGcCCGCUC--UCCCACCGCCu-- -3'
miRNA:   3'- -AGGUaGGUGAGuaGGGGUGGUGGcgu -5'
29492 3' -57.6 NC_006151.1 + 1185 0.68 0.696072
Target:  5'- aCCGUCCAC-C--UCCCACCACCa-- -3'
miRNA:   3'- aGGUAGGUGaGuaGGGGUGGUGGcgu -5'
29492 3' -57.6 NC_006151.1 + 1312 0.68 0.696072
Target:  5'- cCCAUCUGCUaagaCCCACCACCa-- -3'
miRNA:   3'- aGGUAGGUGAguagGGGUGGUGGcgu -5'
29492 3' -57.6 NC_006151.1 + 1360 0.75 0.332584
Target:  5'- cCCAUCCACUUcUUCCCAUCACCa-- -3'
miRNA:   3'- aGGUAGGUGAGuAGGGGUGGUGGcgu -5'
29492 3' -57.6 NC_006151.1 + 1465 0.68 0.716007
Target:  5'- cCCAUCCACaagaccaccUCcaCCCCagagACCACCGCc -3'
miRNA:   3'- aGGUAGGUG---------AGuaGGGG----UGGUGGCGu -5'
29492 3' -57.6 NC_006151.1 + 1689 0.7 0.604729
Target:  5'- gCCcUCCGCcgCggCCgCCGCCGCCGCu -3'
miRNA:   3'- aGGuAGGUGa-GuaGG-GGUGGUGGCGu -5'
29492 3' -57.6 NC_006151.1 + 1720 0.74 0.404776
Target:  5'- aCCAccgCCGC-CAccUCCgCCGCCGCCGCAg -3'
miRNA:   3'- aGGUa--GGUGaGU--AGG-GGUGGUGGCGU- -5'
29492 3' -57.6 NC_006151.1 + 4840 0.68 0.745353
Target:  5'- cCCAgagCCcCUCgcgggaGUCCCCggcGCCGCCGUAg -3'
miRNA:   3'- aGGUa--GGuGAG------UAGGGG---UGGUGGCGU- -5'
29492 3' -57.6 NC_006151.1 + 8916 0.69 0.675926
Target:  5'- cUCC-UCCuCUCcucUCCCCGCCcCCGCc -3'
miRNA:   3'- -AGGuAGGuGAGu--AGGGGUGGuGGCGu -5'
29492 3' -57.6 NC_006151.1 + 9160 0.66 0.843566
Target:  5'- aCCuUCCuCUCc-CCCCuCCACCGCc -3'
miRNA:   3'- aGGuAGGuGAGuaGGGGuGGUGGCGu -5'
29492 3' -57.6 NC_006151.1 + 9467 0.74 0.387898
Target:  5'- uUCCgcGUCCGCUuCGgccCCCCGCgGCCGCGg -3'
miRNA:   3'- -AGG--UAGGUGA-GUa--GGGGUGgUGGCGU- -5'
29492 3' -57.6 NC_006151.1 + 11287 0.74 0.382926
Target:  5'- cCCGUCC-C-CGUCCCCcgcccgcucucccggGCCGCCGCGa -3'
miRNA:   3'- aGGUAGGuGaGUAGGGG---------------UGGUGGCGU- -5'
29492 3' -57.6 NC_006151.1 + 11367 0.72 0.47104
Target:  5'- aCCGcgcgcUCCGCUCGccgccucuuccccccUCCuCCGCCGCCGCc -3'
miRNA:   3'- aGGU-----AGGUGAGU---------------AGG-GGUGGUGGCGu -5'
29492 3' -57.6 NC_006151.1 + 12012 0.67 0.754951
Target:  5'- cCCGUCguCUC--UCCCGCCGgCGCAa -3'
miRNA:   3'- aGGUAGguGAGuaGGGGUGGUgGCGU- -5'
29492 3' -57.6 NC_006151.1 + 12275 0.71 0.574364
Target:  5'- gUCCAggCCGCgggccCAUUCaCCAUCGCCGCGg -3'
miRNA:   3'- -AGGUa-GGUGa----GUAGG-GGUGGUGGCGU- -5'
29492 3' -57.6 NC_006151.1 + 12640 0.72 0.480417
Target:  5'- uUCCc-CCACUCcucccacaccagcCCCCGCCGCCGCGg -3'
miRNA:   3'- -AGGuaGGUGAGua-----------GGGGUGGUGGCGU- -5'
29492 3' -57.6 NC_006151.1 + 12724 0.72 0.486087
Target:  5'- gCCAUucaucgccCCGCUCAUCCgucuUCAUCGCCGCGg -3'
miRNA:   3'- aGGUA--------GGUGAGUAGG----GGUGGUGGCGU- -5'
29492 3' -57.6 NC_006151.1 + 12814 0.71 0.544365
Target:  5'- cUCCgcGUCCcCUC-UCCCCGCCGCCccccGCGg -3'
miRNA:   3'- -AGG--UAGGuGAGuAGGGGUGGUGG----CGU- -5'
29492 3' -57.6 NC_006151.1 + 13040 0.69 0.645461
Target:  5'- cCCGgcggUgACcCAUCCCCACCccGCCGCGc -3'
miRNA:   3'- aGGUa---GgUGaGUAGGGGUGG--UGGCGU- -5'
29492 3' -57.6 NC_006151.1 + 14302 0.74 0.396279
Target:  5'- cCCGUCCcccCUCccUCCCCACC-CCGCGc -3'
miRNA:   3'- aGGUAGGu--GAGu-AGGGGUGGuGGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.