miRNA display CGI


Results 1 - 20 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29492 3' -57.6 NC_006151.1 + 43497 1.09 0.00198
Target:  5'- aUCCAUCCACUCAUCCCCACCACCGCAc -3'
miRNA:   3'- -AGGUAGGUGAGUAGGGGUGGUGGCGU- -5'
29492 3' -57.6 NC_006151.1 + 108197 0.8 0.169872
Target:  5'- aCCGUCUGCUCAgacuacgcUCCCCAggcCCGCCGCAc -3'
miRNA:   3'- aGGUAGGUGAGU--------AGGGGU---GGUGGCGU- -5'
29492 3' -57.6 NC_006151.1 + 55722 0.78 0.212494
Target:  5'- cUCCAUCuCGCUCAUCCUCG-CGCCGUAc -3'
miRNA:   3'- -AGGUAG-GUGAGUAGGGGUgGUGGCGU- -5'
29492 3' -57.6 NC_006151.1 + 61420 0.77 0.245783
Target:  5'- gCCGUCCucCUCggCCCCGCCGCgGCGc -3'
miRNA:   3'- aGGUAGGu-GAGuaGGGGUGGUGgCGU- -5'
29492 3' -57.6 NC_006151.1 + 43059 0.77 0.263994
Target:  5'- gCCGUcgCCAC-CAUCgCCACCGCCGCGu -3'
miRNA:   3'- aGGUA--GGUGaGUAGgGGUGGUGGCGU- -5'
29492 3' -57.6 NC_006151.1 + 81329 0.76 0.317881
Target:  5'- cUCCGcCCcCUCGUCCgucgCCGCCGCCGCGc -3'
miRNA:   3'- -AGGUaGGuGAGUAGG----GGUGGUGGCGU- -5'
29492 3' -57.6 NC_006151.1 + 18722 0.76 0.317881
Target:  5'- gCCGUCCACguagaucgCGUCgUCGCCGCCGCc -3'
miRNA:   3'- aGGUAGGUGa-------GUAGgGGUGGUGGCGu -5'
29492 3' -57.6 NC_006151.1 + 108002 0.75 0.332584
Target:  5'- gCCcgCCACcgCcgCCgCCACCACCGCGc -3'
miRNA:   3'- aGGuaGGUGa-GuaGG-GGUGGUGGCGU- -5'
29492 3' -57.6 NC_006151.1 + 1360 0.75 0.332584
Target:  5'- cCCAUCCACUUcUUCCCAUCACCa-- -3'
miRNA:   3'- aGGUAGGUGAGuAGGGGUGGUGGcgu -5'
29492 3' -57.6 NC_006151.1 + 77193 0.75 0.340121
Target:  5'- gUCCGccgCCGCguccucCAUCCCCgcGCCGCCGCGu -3'
miRNA:   3'- -AGGUa--GGUGa-----GUAGGGG--UGGUGGCGU- -5'
29492 3' -57.6 NC_006151.1 + 108085 0.75 0.363466
Target:  5'- cCCcUCCAC-CAUCCgCCGCgACCGCGg -3'
miRNA:   3'- aGGuAGGUGaGUAGG-GGUGgUGGCGU- -5'
29492 3' -57.6 NC_006151.1 + 11287 0.74 0.382926
Target:  5'- cCCGUCC-C-CGUCCCCcgcccgcucucccggGCCGCCGCGa -3'
miRNA:   3'- aGGUAGGuGaGUAGGGG---------------UGGUGGCGU- -5'
29492 3' -57.6 NC_006151.1 + 9467 0.74 0.387898
Target:  5'- uUCCgcGUCCGCUuCGgccCCCCGCgGCCGCGg -3'
miRNA:   3'- -AGG--UAGGUGA-GUa--GGGGUGgUGGCGU- -5'
29492 3' -57.6 NC_006151.1 + 142217 0.74 0.387898
Target:  5'- cUCCAUCgGCUCuUCCUCGCCGggUCGCGa -3'
miRNA:   3'- -AGGUAGgUGAGuAGGGGUGGU--GGCGU- -5'
29492 3' -57.6 NC_006151.1 + 14302 0.74 0.396279
Target:  5'- cCCGUCCcccCUCccUCCCCACC-CCGCGc -3'
miRNA:   3'- aGGUAGGu--GAGu-AGGGGUGGuGGCGU- -5'
29492 3' -57.6 NC_006151.1 + 1720 0.74 0.404776
Target:  5'- aCCAccgCCGC-CAccUCCgCCGCCGCCGCAg -3'
miRNA:   3'- aGGUa--GGUGaGU--AGG-GGUGGUGGCGU- -5'
29492 3' -57.6 NC_006151.1 + 60608 0.73 0.413386
Target:  5'- cUCCA-CCGCcgUCGUCgCCGCCGCCGUc -3'
miRNA:   3'- -AGGUaGGUG--AGUAGgGGUGGUGGCGu -5'
29492 3' -57.6 NC_006151.1 + 109148 0.73 0.430941
Target:  5'- cUCCGUCUcCaCAU-CCCGCCGCCGCAg -3'
miRNA:   3'- -AGGUAGGuGaGUAgGGGUGGUGGCGU- -5'
29492 3' -57.6 NC_006151.1 + 101814 0.73 0.439881
Target:  5'- cCCGUCCccGC-CGUCCCCgucucggcgGCCGCCGCc -3'
miRNA:   3'- aGGUAGG--UGaGUAGGGG---------UGGUGGCGu -5'
29492 3' -57.6 NC_006151.1 + 127100 0.73 0.458071
Target:  5'- cUCCGUCCcucucccCUCcgUCCCGCgACCGCGa -3'
miRNA:   3'- -AGGUAGGu------GAGuaGGGGUGgUGGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.