miRNA display CGI


Results 1 - 20 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29492 3' -57.6 NC_006151.1 + 142926 0.72 0.476656
Target:  5'- aCCga-CAC-CGUCCCCACCACaCGCGc -3'
miRNA:   3'- aGGuagGUGaGUAGGGGUGGUG-GCGU- -5'
29492 3' -57.6 NC_006151.1 + 142217 0.74 0.387898
Target:  5'- cUCCAUCgGCUCuUCCUCGCCGggUCGCGa -3'
miRNA:   3'- -AGGUAGgUGAGuAGGGGUGGU--GGCGU- -5'
29492 3' -57.6 NC_006151.1 + 141940 0.68 0.716007
Target:  5'- gUCCAUCCcgguCUCucgCCCCACguCCGg- -3'
miRNA:   3'- -AGGUAGGu---GAGua-GGGGUGguGGCgu -5'
29492 3' -57.6 NC_006151.1 + 141901 0.7 0.604729
Target:  5'- cUCCAccUCCACgcg-CCCCGCgGCCGUu -3'
miRNA:   3'- -AGGU--AGGUGaguaGGGGUGgUGGCGu -5'
29492 3' -57.6 NC_006151.1 + 141577 0.68 0.696072
Target:  5'- cUCCG-CCGCUCcUCCCCccgggcgagaGCCGCCcgGCGa -3'
miRNA:   3'- -AGGUaGGUGAGuAGGGG----------UGGUGG--CGU- -5'
29492 3' -57.6 NC_006151.1 + 137637 0.66 0.818626
Target:  5'- cUCCG-CC-CUCGUCCgCGCCcCCGUc -3'
miRNA:   3'- -AGGUaGGuGAGUAGGgGUGGuGGCGu -5'
29492 3' -57.6 NC_006151.1 + 135879 0.67 0.792177
Target:  5'- -gCGUCCGCgugCggCCCguguucguCGCCGCCGCGa -3'
miRNA:   3'- agGUAGGUGa--GuaGGG--------GUGGUGGCGU- -5'
29492 3' -57.6 NC_006151.1 + 135592 0.71 0.574364
Target:  5'- gUUCGUCCggcgGCUCAUaagcccUCCCACgGCCGCGg -3'
miRNA:   3'- -AGGUAGG----UGAGUA------GGGGUGgUGGCGU- -5'
29492 3' -57.6 NC_006151.1 + 134675 0.66 0.843566
Target:  5'- aCgGUCCcCgu-UCCCCGCCAccCCGCGc -3'
miRNA:   3'- aGgUAGGuGaguAGGGGUGGU--GGCGU- -5'
29492 3' -57.6 NC_006151.1 + 134501 0.69 0.675926
Target:  5'- cUUCGggCGCUCGUCCCUcaACCuCCGCGg -3'
miRNA:   3'- -AGGUagGUGAGUAGGGG--UGGuGGCGU- -5'
29492 3' -57.6 NC_006151.1 + 131348 0.67 0.764441
Target:  5'- gCCGgcccCCGCUCGUCCUCuccuCCuCCGCc -3'
miRNA:   3'- aGGUa---GGUGAGUAGGGGu---GGuGGCGu -5'
29492 3' -57.6 NC_006151.1 + 131187 0.67 0.773814
Target:  5'- cCCAUCC--UCGUCCCCAUCcUCGUc -3'
miRNA:   3'- aGGUAGGugAGUAGGGGUGGuGGCGu -5'
29492 3' -57.6 NC_006151.1 + 127782 0.7 0.594578
Target:  5'- gCCcUCCccCUC--CCCCGCCGCCGCGc -3'
miRNA:   3'- aGGuAGGu-GAGuaGGGGUGGUGGCGU- -5'
29492 3' -57.6 NC_006151.1 + 127100 0.73 0.458071
Target:  5'- cUCCGUCCcucucccCUCcgUCCCGCgACCGCGa -3'
miRNA:   3'- -AGGUAGGu------GAGuaGGGGUGgUGGCGU- -5'
29492 3' -57.6 NC_006151.1 + 117932 0.68 0.729796
Target:  5'- gUCCGcCCggagaggggaccgagACUCGaCCCCGuCCGCCGCGc -3'
miRNA:   3'- -AGGUaGG---------------UGAGUaGGGGU-GGUGGCGU- -5'
29492 3' -57.6 NC_006151.1 + 117897 0.68 0.745353
Target:  5'- aCC-UCCGCcucucucuUCA-CCCCGCCGCCGg- -3'
miRNA:   3'- aGGuAGGUG--------AGUaGGGGUGGUGGCgu -5'
29492 3' -57.6 NC_006151.1 + 114443 0.66 0.809967
Target:  5'- aCCGcCUGCUCGgggccugCgCCgGCCACCGCAu -3'
miRNA:   3'- aGGUaGGUGAGUa------G-GGgUGGUGGCGU- -5'
29492 3' -57.6 NC_006151.1 + 112430 0.69 0.675926
Target:  5'- aCCG-CCGCg---CCgCCGCCGCCGCGc -3'
miRNA:   3'- aGGUaGGUGaguaGG-GGUGGUGGCGU- -5'
29492 3' -57.6 NC_006151.1 + 112213 0.67 0.771015
Target:  5'- cCCGUgggcgcagucgcgcUCGCUCGUCgCCGCCGCCagGCGc -3'
miRNA:   3'- aGGUA--------------GGUGAGUAGgGGUGGUGG--CGU- -5'
29492 3' -57.6 NC_006151.1 + 111380 0.66 0.835433
Target:  5'- cCUcgCCG-UCGUCgCCGCCGCCgGCAc -3'
miRNA:   3'- aGGuaGGUgAGUAGgGGUGGUGG-CGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.