miRNA display CGI


Results 41 - 60 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29492 3' -57.6 NC_006151.1 + 32238 0.69 0.655637
Target:  5'- cUCCuggCCGCggCGaCCgCCGCCGCCGCu -3'
miRNA:   3'- -AGGua-GGUGa-GUaGG-GGUGGUGGCGu -5'
29492 3' -57.6 NC_006151.1 + 32741 0.69 0.675926
Target:  5'- cCCGUCCcCUCuuccuUCCCCACaCGCCccGCu -3'
miRNA:   3'- aGGUAGGuGAGu----AGGGGUG-GUGG--CGu -5'
29492 3' -57.6 NC_006151.1 + 36110 0.72 0.50521
Target:  5'- gCCGaggCCGC-CGUCCUCGCgGCCGCGg -3'
miRNA:   3'- aGGUa--GGUGaGUAGGGGUGgUGGCGU- -5'
29492 3' -57.6 NC_006151.1 + 36404 0.7 0.604729
Target:  5'- cCCGggCGCUCGUCCCC-CU-CCGCAg -3'
miRNA:   3'- aGGUagGUGAGUAGGGGuGGuGGCGU- -5'
29492 3' -57.6 NC_006151.1 + 36690 0.66 0.846766
Target:  5'- aCCAgcaCCGCgagccccugcucgaCGagCCCGCCGCCGCGa -3'
miRNA:   3'- aGGUa--GGUGa-------------GUagGGGUGGUGGCGU- -5'
29492 3' -57.6 NC_006151.1 + 36782 0.69 0.645461
Target:  5'- cCCAacUCCaACUCcaacUCCaCCACCACCGUc -3'
miRNA:   3'- aGGU--AGG-UGAGu---AGG-GGUGGUGGCGu -5'
29492 3' -57.6 NC_006151.1 + 37002 0.7 0.584454
Target:  5'- gCCcUCCGCccccCGggcCCCCGCCGCCGCc -3'
miRNA:   3'- aGGuAGGUGa---GUa--GGGGUGGUGGCGu -5'
29492 3' -57.6 NC_006151.1 + 37158 0.69 0.634255
Target:  5'- gCCG-CCAC-CGUCUCCGCCggcgcccGCCGCGg -3'
miRNA:   3'- aGGUaGGUGaGUAGGGGUGG-------UGGCGU- -5'
29492 3' -57.6 NC_006151.1 + 37206 0.67 0.783063
Target:  5'- cUCC-UCCGcCUCcUCCuCCGCCGCgGCc -3'
miRNA:   3'- -AGGuAGGU-GAGuAGG-GGUGGUGgCGu -5'
29492 3' -57.6 NC_006151.1 + 37451 0.67 0.792177
Target:  5'- -aCGUCCGC-CAggccgcggCCCGCUACCGCGc -3'
miRNA:   3'- agGUAGGUGaGUag------GGGUGGUGGCGU- -5'
29492 3' -57.6 NC_006151.1 + 37736 0.71 0.564315
Target:  5'- cCCAggacCCGCUCugggCCCUGCCGCaCGCGg -3'
miRNA:   3'- aGGUa---GGUGAGua--GGGGUGGUG-GCGU- -5'
29492 3' -57.6 NC_006151.1 + 37906 0.66 0.818626
Target:  5'- gCCcUCUGCgcccgCGUCCCgccgccuuCGCCGCCGCGc -3'
miRNA:   3'- aGGuAGGUGa----GUAGGG--------GUGGUGGCGU- -5'
29492 3' -57.6 NC_006151.1 + 38510 0.67 0.792177
Target:  5'- cUCCGgcuacgCCAgCUC--CCCCGCCGCCGg- -3'
miRNA:   3'- -AGGUa-----GGU-GAGuaGGGGUGGUGGCgu -5'
29492 3' -57.6 NC_006151.1 + 38999 0.67 0.783063
Target:  5'- gCCGcgcgCCGCggcgccCcgCUCCGCCGCCGCGc -3'
miRNA:   3'- aGGUa---GGUGa-----GuaGGGGUGGUGGCGU- -5'
29492 3' -57.6 NC_006151.1 + 39976 0.66 0.835433
Target:  5'- gCCG-CCGCgggCG-CCCCGCCgGCCGUg -3'
miRNA:   3'- aGGUaGGUGa--GUaGGGGUGG-UGGCGu -5'
29492 3' -57.6 NC_006151.1 + 40387 0.69 0.645461
Target:  5'- cCCGUCCucCUCcUCCUCugCGuCCGCGg -3'
miRNA:   3'- aGGUAGGu-GAGuAGGGGugGU-GGCGU- -5'
29492 3' -57.6 NC_006151.1 + 41427 0.68 0.696072
Target:  5'- uUCCGUCCccACUCccagccUCCCCcgcuGCCACCGa- -3'
miRNA:   3'- -AGGUAGG--UGAGu-----AGGGG----UGGUGGCgu -5'
29492 3' -57.6 NC_006151.1 + 42542 0.67 0.773814
Target:  5'- uUCUAgguuUCC-CUCuUCCCCGCCACCc-- -3'
miRNA:   3'- -AGGU----AGGuGAGuAGGGGUGGUGGcgu -5'
29492 3' -57.6 NC_006151.1 + 42650 0.67 0.773814
Target:  5'- gUCUggCCGggCAUCCCCGCCGCgGgGa -3'
miRNA:   3'- -AGGuaGGUgaGUAGGGGUGGUGgCgU- -5'
29492 3' -57.6 NC_006151.1 + 42942 0.67 0.783063
Target:  5'- cUCCccCCAC--AUCCUCGCCAuCCGCGg -3'
miRNA:   3'- -AGGuaGGUGagUAGGGGUGGU-GGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.