miRNA display CGI


Results 41 - 60 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29492 5' -54.8 NC_006151.1 + 31405 0.77 0.36306
Target:  5'- gGCcgGGGcgaggGGAAGGGgaagggGGGGGACGGg -3'
miRNA:   3'- aCGuaCCCa----CCUUCCUa-----CCCCUUGUC- -5'
29492 5' -54.8 NC_006151.1 + 33164 0.67 0.876083
Target:  5'- gGUcgGGGgcgGGGAGGAagggaggugugGGGGGAUGGc -3'
miRNA:   3'- aCGuaCCCa--CCUUCCUa----------CCCCUUGUC- -5'
29492 5' -54.8 NC_006151.1 + 33240 0.73 0.57953
Target:  5'- gGCGggagGGGguccgggGGAAGGGUGGGGcgguGGCGGc -3'
miRNA:   3'- aCGUa---CCCa------CCUUCCUACCCC----UUGUC- -5'
29492 5' -54.8 NC_006151.1 + 33312 0.72 0.652422
Target:  5'- cGCGUGGGaccgGGAccGGGAcaGGGGGCGGg -3'
miRNA:   3'- aCGUACCCa---CCU--UCCUacCCCUUGUC- -5'
29492 5' -54.8 NC_006151.1 + 34353 0.7 0.72445
Target:  5'- gGCGUgucucgugGGGUGGGAGG--GGGGAcCGGg -3'
miRNA:   3'- aCGUA--------CCCACCUUCCuaCCCCUuGUC- -5'
29492 5' -54.8 NC_006151.1 + 34399 0.68 0.853059
Target:  5'- gGgGUGGG-GGAgAGGA-GGGGGugGGu -3'
miRNA:   3'- aCgUACCCaCCU-UCCUaCCCCUugUC- -5'
29492 5' -54.8 NC_006151.1 + 34643 0.7 0.764001
Target:  5'- cGCggGGGUcgcGGGAGGGUcucGGGGGucuCAGg -3'
miRNA:   3'- aCGuaCCCA---CCUUCCUA---CCCCUu--GUC- -5'
29492 5' -54.8 NC_006151.1 + 41302 0.76 0.432231
Target:  5'- gUGCGUGaGG-GGggGGggGGGGggUGGu -3'
miRNA:   3'- -ACGUAC-CCaCCuuCCuaCCCCuuGUC- -5'
29492 5' -54.8 NC_006151.1 + 41364 0.67 0.889619
Target:  5'- cGuCGUGGaGgGGAGGGAaaggcggUGGGaGAGCGGg -3'
miRNA:   3'- aC-GUACC-CaCCUUCCU-------ACCC-CUUGUC- -5'
29492 5' -54.8 NC_006151.1 + 41854 0.7 0.734486
Target:  5'- aUGCAaaUGGG-GGggGGggGGaGGAGCc- -3'
miRNA:   3'- -ACGU--ACCCaCCuuCCuaCC-CCUUGuc -5'
29492 5' -54.8 NC_006151.1 + 41931 0.68 0.860951
Target:  5'- aUGCAgauuaGGG-GGAGGGGUuaugcagauuaGGGGGAgGGg -3'
miRNA:   3'- -ACGUa----CCCaCCUUCCUA-----------CCCCUUgUC- -5'
29492 5' -54.8 NC_006151.1 + 41975 0.68 0.860951
Target:  5'- aUGCAgauuaGGG-GGAGGGGUuaugcagauuaGGGGGAgGGg -3'
miRNA:   3'- -ACGUa----CCCaCCUUCCUA-----------CCCCUUgUC- -5'
29492 5' -54.8 NC_006151.1 + 42336 0.68 0.860951
Target:  5'- cUGCGacgGGaGUGGAGcGGA-GGGGAGgGGa -3'
miRNA:   3'- -ACGUa--CC-CACCUU-CCUaCCCCUUgUC- -5'
29492 5' -54.8 NC_006151.1 + 42795 0.7 0.728475
Target:  5'- gGCG-GGGUGGcGGGAcgcgucgaggucgugUGGGGGAgAGa -3'
miRNA:   3'- aCGUaCCCACCuUCCU---------------ACCCCUUgUC- -5'
29492 5' -54.8 NC_006151.1 + 43531 1.1 0.002725
Target:  5'- aUGCAUGGGUGGAAGGAUGGGGAACAGg -3'
miRNA:   3'- -ACGUACCCACCUUCCUACCCCUUGUC- -5'
29492 5' -54.8 NC_006151.1 + 43901 0.66 0.909867
Target:  5'- cGCGgagagGGGUagGGGAGG--GGGGAAgAGa -3'
miRNA:   3'- aCGUa----CCCA--CCUUCCuaCCCCUUgUC- -5'
29492 5' -54.8 NC_006151.1 + 44263 0.66 0.90359
Target:  5'- aGUcgauGGUGGAGGGAgcGGGGAaauGCGGa -3'
miRNA:   3'- aCGuac-CCACCUUCCUa-CCCCU---UGUC- -5'
29492 5' -54.8 NC_006151.1 + 44349 0.72 0.600274
Target:  5'- cGCGgacGGGUGGGAcGGcgGGGGAGaGGg -3'
miRNA:   3'- aCGUa--CCCACCUU-CCuaCCCCUUgUC- -5'
29492 5' -54.8 NC_006151.1 + 44473 0.77 0.379619
Target:  5'- gGUGaGGGUGGAcggggGGGGUGGGGGAUGGu -3'
miRNA:   3'- aCGUaCCCACCU-----UCCUACCCCUUGUC- -5'
29492 5' -54.8 NC_006151.1 + 44502 0.67 0.890308
Target:  5'- nGUGUgGGGUGGc--GGUGGGGAagcGCGGg -3'
miRNA:   3'- aCGUA-CCCACCuucCUACCCCU---UGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.