miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29492 5' -54.8 NC_006151.1 + 16403 0.66 0.932507
Target:  5'- gGgGUGgagacGGUGGAGGGAgaGGGGAGUGGg -3'
miRNA:   3'- aCgUAC-----CCACCUUCCUa-CCCCUUGUC- -5'
29492 5' -54.8 NC_006151.1 + 16438 0.66 0.932507
Target:  5'- gGgGUGgagacGGUGGAGGGAgaGGGGAGUGGg -3'
miRNA:   3'- aCgUAC-----CCACCUUCCUa-CCCCUUGUC- -5'
29492 5' -54.8 NC_006151.1 + 16473 0.66 0.932507
Target:  5'- gGgGUGgagacGGUGGAGGGAgaGGGGAGUGGg -3'
miRNA:   3'- aCgUAC-----CCACCUUCCUa-CCCCUUGUC- -5'
29492 5' -54.8 NC_006151.1 + 16725 0.75 0.488858
Target:  5'- aGCggGGGggggGGAAGGG-GGGGAAgGGg -3'
miRNA:   3'- aCGuaCCCa---CCUUCCUaCCCCUUgUC- -5'
29492 5' -54.8 NC_006151.1 + 23005 0.71 0.693885
Target:  5'- cGCGcGGGUGGGggcgcgGGGGUGGuGGAGgCGGc -3'
miRNA:   3'- aCGUaCCCACCU------UCCUACC-CCUU-GUC- -5'
29492 5' -54.8 NC_006151.1 + 23435 0.84 0.142246
Target:  5'- gGCgAUGGGUGGGAGGGUGGccccGGGGCGGg -3'
miRNA:   3'- aCG-UACCCACCUUCCUACC----CCUUGUC- -5'
29492 5' -54.8 NC_006151.1 + 26287 0.74 0.527466
Target:  5'- gGCGgacggugGGGUGGggGGGguggGGGGAggaaagaACAGc -3'
miRNA:   3'- aCGUa------CCCACCuuCCUa---CCCCU-------UGUC- -5'
29492 5' -54.8 NC_006151.1 + 27307 0.74 0.528472
Target:  5'- gGCGUGGG-GGucGAGGcgGGGGA-CGGg -3'
miRNA:   3'- aCGUACCCaCC--UUCCuaCCCCUuGUC- -5'
29492 5' -54.8 NC_006151.1 + 27479 0.71 0.673223
Target:  5'- aGCGggGGGUcGGcGGGGUGguGGGAACGGg -3'
miRNA:   3'- aCGUa-CCCA-CCuUCCUAC--CCCUUGUC- -5'
29492 5' -54.8 NC_006151.1 + 27530 0.82 0.189134
Target:  5'- gGCGUGGGgggGGggGGggGGGGGGgGGg -3'
miRNA:   3'- aCGUACCCa--CCuuCCuaCCCCUUgUC- -5'
29492 5' -54.8 NC_006151.1 + 27949 0.81 0.21464
Target:  5'- cGCGcgGGGUGGGgaGGGAgGGGGGACGGg -3'
miRNA:   3'- aCGUa-CCCACCU--UCCUaCCCCUUGUC- -5'
29492 5' -54.8 NC_006151.1 + 29205 0.66 0.909867
Target:  5'- ----aGGGgcgcGGcGGGGUGGGGAugGGu -3'
miRNA:   3'- acguaCCCa---CCuUCCUACCCCUugUC- -5'
29492 5' -54.8 NC_006151.1 + 29277 0.68 0.860951
Target:  5'- ----cGGGUgagucGGGAGGGUGGGGugggAGCGGa -3'
miRNA:   3'- acguaCCCA-----CCUUCCUACCCC----UUGUC- -5'
29492 5' -54.8 NC_006151.1 + 29338 0.71 0.683576
Target:  5'- gGCGggagagagGGG-GGggGGAgagggggcGGGGAGCGGg -3'
miRNA:   3'- aCGUa-------CCCaCCuuCCUa-------CCCCUUGUC- -5'
29492 5' -54.8 NC_006151.1 + 29617 0.74 0.508502
Target:  5'- gGC-UGGuGUGGGAGGAgugGGGGAAUugGGg -3'
miRNA:   3'- aCGuACC-CACCUUCCUa--CCCCUUG--UC- -5'
29492 5' -54.8 NC_006151.1 + 29656 0.72 0.631553
Target:  5'- --aAUGGGgggaggaGGAAGGGgggGGGGGGCGGg -3'
miRNA:   3'- acgUACCCa------CCUUCCUa--CCCCUUGUC- -5'
29492 5' -54.8 NC_006151.1 + 30022 0.73 0.589886
Target:  5'- gGCAggaGGG-GGGAGGAggggGGGGAGgAGu -3'
miRNA:   3'- aCGUa--CCCaCCUUCCUa---CCCCUUgUC- -5'
29492 5' -54.8 NC_006151.1 + 30638 0.67 0.876083
Target:  5'- cGgGUGGGUGG-GGGAgGGGGuuGAUGGc -3'
miRNA:   3'- aCgUACCCACCuUCCUaCCCC--UUGUC- -5'
29492 5' -54.8 NC_006151.1 + 30835 0.67 0.897069
Target:  5'- uUGCGUGGGcGGAgAGGAgcgaGGaGGAcugGCGGc -3'
miRNA:   3'- -ACGUACCCaCCU-UCCUa---CC-CCU---UGUC- -5'
29492 5' -54.8 NC_006151.1 + 30971 0.68 0.853059
Target:  5'- aGCGggcgGGGgacggGGAcgGGGAcGGGGAGgAGg -3'
miRNA:   3'- aCGUa---CCCa----CCU--UCCUaCCCCUUgUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.