miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29492 5' -54.8 NC_006151.1 + 5260 0.66 0.921684
Target:  5'- gGCccGGG-GGgcGGA-GGGcGAGCGGg -3'
miRNA:   3'- aCGuaCCCaCCuuCCUaCCC-CUUGUC- -5'
29492 5' -54.8 NC_006151.1 + 5654 0.66 0.92722
Target:  5'- gGCccGGcGgcggGGGAGGcUGGGGAAgCGGg -3'
miRNA:   3'- aCGuaCC-Ca---CCUUCCuACCCCUU-GUC- -5'
29492 5' -54.8 NC_006151.1 + 8096 0.71 0.683576
Target:  5'- gGCGUGGcagaggGGGAGGggGGGGGuCGGa -3'
miRNA:   3'- aCGUACCca----CCUUCCuaCCCCUuGUC- -5'
29492 5' -54.8 NC_006151.1 + 8580 0.7 0.754271
Target:  5'- gUGgGUGGGUGuGAGGGccggugcgaguAUGGGGGccgguGCGGg -3'
miRNA:   3'- -ACgUACCCAC-CUUCC-----------UACCCCU-----UGUC- -5'
29492 5' -54.8 NC_006151.1 + 9513 0.75 0.450691
Target:  5'- gGCGUGuGG-GGAAGGAaGaGGGGACGGg -3'
miRNA:   3'- aCGUAC-CCaCCUUCCUaC-CCCUUGUC- -5'
29492 5' -54.8 NC_006151.1 + 10357 0.68 0.860951
Target:  5'- cGCGggaGGGgaggGGAGGGA-GGGGAGg-- -3'
miRNA:   3'- aCGUa--CCCa---CCUUCCUaCCCCUUguc -5'
29492 5' -54.8 NC_006151.1 + 10386 0.76 0.432231
Target:  5'- gGUcgGGGggaagGGAGGGggGGGGAgaGCGGg -3'
miRNA:   3'- aCGuaCCCa----CCUUCCuaCCCCU--UGUC- -5'
29492 5' -54.8 NC_006151.1 + 11736 0.75 0.479169
Target:  5'- aGCggGGGUGaGggGGA-GGGGuGCGGg -3'
miRNA:   3'- aCGuaCCCAC-CuuCCUaCCCCuUGUC- -5'
29492 5' -54.8 NC_006151.1 + 11793 0.79 0.294896
Target:  5'- cGCGUGGGcgagagGGGcgggguGGGGUGGGGGGCGGc -3'
miRNA:   3'- aCGUACCCa-----CCU------UCCUACCCCUUGUC- -5'
29492 5' -54.8 NC_006151.1 + 12342 0.69 0.801604
Target:  5'- ---uUGGG-GGAAGGAggggcGGGGAGCGc -3'
miRNA:   3'- acguACCCaCCUUCCUa----CCCCUUGUc -5'
29492 5' -54.8 NC_006151.1 + 14465 0.66 0.90359
Target:  5'- gGguUGGGuUGGgcGGGUGGGcGggUg- -3'
miRNA:   3'- aCguACCC-ACCuuCCUACCC-CuuGuc -5'
29492 5' -54.8 NC_006151.1 + 14492 0.75 0.460082
Target:  5'- gGCggGGGUcgGGAGGGAUcgGGGGAAgGGg -3'
miRNA:   3'- aCGuaCCCA--CCUUCCUA--CCCCUUgUC- -5'
29492 5' -54.8 NC_006151.1 + 16123 0.66 0.932507
Target:  5'- gGgGUGgagacGGUGGAGGGAgaGGGGAGUGGg -3'
miRNA:   3'- aCgUAC-----CCACCUUCCUa-CCCCUUGUC- -5'
29492 5' -54.8 NC_006151.1 + 16158 0.66 0.932507
Target:  5'- gGgGUGgagacGGUGGAGGGAgaGGGGAGUGGg -3'
miRNA:   3'- aCgUAC-----CCACCUUCCUa-CCCCUUGUC- -5'
29492 5' -54.8 NC_006151.1 + 16193 0.66 0.932507
Target:  5'- gGgGUGgagacGGUGGAGGGAgaGGGGAGUGGg -3'
miRNA:   3'- aCgUAC-----CCACCUUCCUa-CCCCUUGUC- -5'
29492 5' -54.8 NC_006151.1 + 16228 0.66 0.932507
Target:  5'- gGgGUGgagacGGUGGAGGGAgaGGGGAGUGGg -3'
miRNA:   3'- aCgUAC-----CCACCUUCCUa-CCCCUUGUC- -5'
29492 5' -54.8 NC_006151.1 + 16263 0.66 0.932507
Target:  5'- gGgGUGgagacGGUGGAGGGAgaGGGGAGUGGg -3'
miRNA:   3'- aCgUAC-----CCACCUUCCUa-CCCCUUGUC- -5'
29492 5' -54.8 NC_006151.1 + 16298 0.66 0.932507
Target:  5'- gGgGUGgagacGGUGGAGGGAgaGGGGAGUGGg -3'
miRNA:   3'- aCgUAC-----CCACCUUCCUa-CCCCUUGUC- -5'
29492 5' -54.8 NC_006151.1 + 16333 0.66 0.932507
Target:  5'- gGgGUGgagacGGUGGAGGGAgaGGGGAGUGGg -3'
miRNA:   3'- aCgUAC-----CCACCUUCCUa-CCCCUUGUC- -5'
29492 5' -54.8 NC_006151.1 + 16368 0.66 0.932507
Target:  5'- gGgGUGgagacGGUGGAGGGAgaGGGGAGUGGg -3'
miRNA:   3'- aCgUAC-----CCACCUUCCUa-CCCCUUGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.