miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29492 5' -54.8 NC_006151.1 + 43531 1.1 0.002725
Target:  5'- aUGCAUGGGUGGAAGGAUGGGGAACAGg -3'
miRNA:   3'- -ACGUACCCACCUUCCUACCCCUUGUC- -5'
29492 5' -54.8 NC_006151.1 + 23435 0.84 0.142246
Target:  5'- gGCgAUGGGUGGGAGGGUGGccccGGGGCGGg -3'
miRNA:   3'- aCG-UACCCACCUUCCUACC----CCUUGUC- -5'
29492 5' -54.8 NC_006151.1 + 27530 0.82 0.189134
Target:  5'- gGCGUGGGgggGGggGGggGGGGGGgGGg -3'
miRNA:   3'- aCGUACCCa--CCuuCCuaCCCCUUgUC- -5'
29492 5' -54.8 NC_006151.1 + 27949 0.81 0.21464
Target:  5'- cGCGcgGGGUGGGgaGGGAgGGGGGACGGg -3'
miRNA:   3'- aCGUa-CCCACCU--UCCUaCCCCUUGUC- -5'
29492 5' -54.8 NC_006151.1 + 51016 0.79 0.294896
Target:  5'- uUGUcgGGGUGGGauggggguGGGAUGGGGAugGu -3'
miRNA:   3'- -ACGuaCCCACCU--------UCCUACCCCUugUc -5'
29492 5' -54.8 NC_006151.1 + 11793 0.79 0.294896
Target:  5'- cGCGUGGGcgagagGGGcgggguGGGGUGGGGGGCGGc -3'
miRNA:   3'- aCGUACCCa-----CCU------UCCUACCCCUUGUC- -5'
29492 5' -54.8 NC_006151.1 + 31405 0.77 0.36306
Target:  5'- gGCcgGGGcgaggGGAAGGGgaagggGGGGGACGGg -3'
miRNA:   3'- aCGuaCCCa----CCUUCCUa-----CCCCUUGUC- -5'
29492 5' -54.8 NC_006151.1 + 44473 0.77 0.379619
Target:  5'- gGUGaGGGUGGAcggggGGGGUGGGGGAUGGu -3'
miRNA:   3'- aCGUaCCCACCU-----UCCUACCCCUUGUC- -5'
29492 5' -54.8 NC_006151.1 + 71550 0.76 0.423167
Target:  5'- uUGCGaGGGaGGggGGGgcgaGGGGGACGGg -3'
miRNA:   3'- -ACGUaCCCaCCuuCCUa---CCCCUUGUC- -5'
29492 5' -54.8 NC_006151.1 + 41302 0.76 0.432231
Target:  5'- gUGCGUGaGG-GGggGGggGGGGggUGGu -3'
miRNA:   3'- -ACGUAC-CCaCCuuCCuaCCCCuuGUC- -5'
29492 5' -54.8 NC_006151.1 + 10386 0.76 0.432231
Target:  5'- gGUcgGGGggaagGGAGGGggGGGGAgaGCGGg -3'
miRNA:   3'- aCGuaCCCa----CCUUCCuaCCCCU--UGUC- -5'
29492 5' -54.8 NC_006151.1 + 45046 0.75 0.450691
Target:  5'- aGCGUGGGgggugUGGggGGAUGGG--ACGGc -3'
miRNA:   3'- aCGUACCC-----ACCuuCCUACCCcuUGUC- -5'
29492 5' -54.8 NC_006151.1 + 9513 0.75 0.450691
Target:  5'- gGCGUGuGG-GGAAGGAaGaGGGGACGGg -3'
miRNA:   3'- aCGUAC-CCaCCUUCCUaC-CCCUUGUC- -5'
29492 5' -54.8 NC_006151.1 + 14492 0.75 0.460082
Target:  5'- gGCggGGGUcgGGAGGGAUcgGGGGAAgGGg -3'
miRNA:   3'- aCGuaCCCA--CCUUCCUA--CCCCUUgUC- -5'
29492 5' -54.8 NC_006151.1 + 11736 0.75 0.479169
Target:  5'- aGCggGGGUGaGggGGA-GGGGuGCGGg -3'
miRNA:   3'- aCGuaCCCAC-CuuCCUaCCCCuUGUC- -5'
29492 5' -54.8 NC_006151.1 + 87792 0.75 0.488858
Target:  5'- aGUGUGGGUGGGagAGGGUGGGaGAggGCGc -3'
miRNA:   3'- aCGUACCCACCU--UCCUACCC-CU--UGUc -5'
29492 5' -54.8 NC_006151.1 + 16725 0.75 0.488858
Target:  5'- aGCggGGGggggGGAAGGG-GGGGAAgGGg -3'
miRNA:   3'- aCGuaCCCa---CCUUCCUaCCCCUUgUC- -5'
29492 5' -54.8 NC_006151.1 + 29617 0.74 0.508502
Target:  5'- gGC-UGGuGUGGGAGGAgugGGGGAAUugGGg -3'
miRNA:   3'- aCGuACC-CACCUUCCUa--CCCCUUG--UC- -5'
29492 5' -54.8 NC_006151.1 + 26287 0.74 0.527466
Target:  5'- gGCGgacggugGGGUGGggGGGguggGGGGAggaaagaACAGc -3'
miRNA:   3'- aCGUa------CCCACCuuCCUa---CCCCU-------UGUC- -5'
29492 5' -54.8 NC_006151.1 + 27307 0.74 0.528472
Target:  5'- gGCGUGGG-GGucGAGGcgGGGGA-CGGg -3'
miRNA:   3'- aCGUACCCaCC--UUCCuaCCCCUuGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.