miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29492 5' -54.8 NC_006151.1 + 33240 0.73 0.57953
Target:  5'- gGCGggagGGGguccgggGGAAGGGUGGGGcgguGGCGGc -3'
miRNA:   3'- aCGUa---CCCa------CCUUCCUACCCC----UUGUC- -5'
29492 5' -54.8 NC_006151.1 + 30022 0.73 0.589886
Target:  5'- gGCAggaGGG-GGGAGGAggggGGGGAGgAGu -3'
miRNA:   3'- aCGUa--CCCaCCUUCCUa---CCCCUUgUC- -5'
29492 5' -54.8 NC_006151.1 + 44349 0.72 0.600274
Target:  5'- cGCGgacGGGUGGGAcGGcgGGGGAGaGGg -3'
miRNA:   3'- aCGUa--CCCACCUU-CCuaCCCCUUgUC- -5'
29492 5' -54.8 NC_006151.1 + 29656 0.72 0.631553
Target:  5'- --aAUGGGgggaggaGGAAGGGgggGGGGGGCGGg -3'
miRNA:   3'- acgUACCCa------CCUUCCUa--CCCCUUGUC- -5'
29492 5' -54.8 NC_006151.1 + 33312 0.72 0.652422
Target:  5'- cGCGUGGGaccgGGAccGGGAcaGGGGGCGGg -3'
miRNA:   3'- aCGUACCCa---CCU--UCCUacCCCUUGUC- -5'
29492 5' -54.8 NC_006151.1 + 27479 0.71 0.673223
Target:  5'- aGCGggGGGUcGGcGGGGUGguGGGAACGGg -3'
miRNA:   3'- aCGUa-CCCA-CCuUCCUAC--CCCUUGUC- -5'
29492 5' -54.8 NC_006151.1 + 8096 0.71 0.683576
Target:  5'- gGCGUGGcagaggGGGAGGggGGGGGuCGGa -3'
miRNA:   3'- aCGUACCca----CCUUCCuaCCCCUuGUC- -5'
29492 5' -54.8 NC_006151.1 + 91675 0.71 0.683576
Target:  5'- cUGCGccGGGUGGugcgcguGGGUGGGGuGGCGGu -3'
miRNA:   3'- -ACGUa-CCCACCuu-----CCUACCCC-UUGUC- -5'
29492 5' -54.8 NC_006151.1 + 29338 0.71 0.683576
Target:  5'- gGCGggagagagGGG-GGggGGAgagggggcGGGGAGCGGg -3'
miRNA:   3'- aCGUa-------CCCaCCuuCCUa-------CCCCUUGUC- -5'
29492 5' -54.8 NC_006151.1 + 72592 0.71 0.693885
Target:  5'- aGUcgGGGUG--AGGG-GGGGGGCAGg -3'
miRNA:   3'- aCGuaCCCACcuUCCUaCCCCUUGUC- -5'
29492 5' -54.8 NC_006151.1 + 23005 0.71 0.693885
Target:  5'- cGCGcGGGUGGGggcgcgGGGGUGGuGGAGgCGGc -3'
miRNA:   3'- aCGUaCCCACCU------UCCUACC-CCUU-GUC- -5'
29492 5' -54.8 NC_006151.1 + 75292 0.71 0.70414
Target:  5'- aGCGUGGcGUccacguccaGGAAGGA-GGGGuGGCAGa -3'
miRNA:   3'- aCGUACC-CA---------CCUUCCUaCCCC-UUGUC- -5'
29492 5' -54.8 NC_006151.1 + 34353 0.7 0.72445
Target:  5'- gGCGUgucucgugGGGUGGGAGG--GGGGAcCGGg -3'
miRNA:   3'- aCGUA--------CCCACCUUCCuaCCCCUuGUC- -5'
29492 5' -54.8 NC_006151.1 + 42795 0.7 0.728475
Target:  5'- gGCG-GGGUGGcGGGAcgcgucgaggucgugUGGGGGAgAGa -3'
miRNA:   3'- aCGUaCCCACCuUCCU---------------ACCCCUUgUC- -5'
29492 5' -54.8 NC_006151.1 + 41854 0.7 0.734486
Target:  5'- aUGCAaaUGGG-GGggGGggGGaGGAGCc- -3'
miRNA:   3'- -ACGU--ACCCaCCuuCCuaCC-CCUUGuc -5'
29492 5' -54.8 NC_006151.1 + 143088 0.7 0.754271
Target:  5'- gUGCcaGGGUaGGAGGGGgauUGGGGuugGCAGg -3'
miRNA:   3'- -ACGuaCCCA-CCUUCCU---ACCCCu--UGUC- -5'
29492 5' -54.8 NC_006151.1 + 8580 0.7 0.754271
Target:  5'- gUGgGUGGGUGuGAGGGccggugcgaguAUGGGGGccgguGCGGg -3'
miRNA:   3'- -ACgUACCCAC-CUUCC-----------UACCCCU-----UGUC- -5'
29492 5' -54.8 NC_006151.1 + 34643 0.7 0.764001
Target:  5'- cGCggGGGUcgcGGGAGGGUcucGGGGGucuCAGg -3'
miRNA:   3'- aCGuaCCCA---CCUUCCUA---CCCCUu--GUC- -5'
29492 5' -54.8 NC_006151.1 + 110463 0.69 0.773608
Target:  5'- gGCGgggauUGGGggacuugGGggGGAuUGGGGGACu- -3'
miRNA:   3'- aCGU-----ACCCa------CCuuCCU-ACCCCUUGuc -5'
29492 5' -54.8 NC_006151.1 + 121655 0.69 0.783084
Target:  5'- gGCGgacGGGcGGgcGGAgggGGGGAGCGa -3'
miRNA:   3'- aCGUa--CCCaCCuuCCUa--CCCCUUGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.