miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29492 5' -54.8 NC_006151.1 + 14465 0.66 0.90359
Target:  5'- gGguUGGGuUGGgcGGGUGGGcGggUg- -3'
miRNA:   3'- aCguACCC-ACCuuCCUACCC-CuuGuc -5'
29492 5' -54.8 NC_006151.1 + 44263 0.66 0.90359
Target:  5'- aGUcgauGGUGGAGGGAgcGGGGAaauGCGGa -3'
miRNA:   3'- aCGuac-CCACCUUCCUa-CCCCU---UGUC- -5'
29492 5' -54.8 NC_006151.1 + 130933 0.67 0.897069
Target:  5'- cGCggGGGcggGGgcGGcgGGGGGucgcGCGGg -3'
miRNA:   3'- aCGuaCCCa--CCuuCCuaCCCCU----UGUC- -5'
29492 5' -54.8 NC_006151.1 + 30835 0.67 0.897069
Target:  5'- uUGCGUGGGcGGAgAGGAgcgaGGaGGAcugGCGGc -3'
miRNA:   3'- -ACGUACCCaCCU-UCCUa---CC-CCU---UGUC- -5'
29492 5' -54.8 NC_006151.1 + 44502 0.67 0.890308
Target:  5'- nGUGUgGGGUGGc--GGUGGGGAagcGCGGg -3'
miRNA:   3'- aCGUA-CCCACCuucCUACCCCU---UGUC- -5'
29492 5' -54.8 NC_006151.1 + 72556 0.67 0.890308
Target:  5'- cGCGcGGccgcgcGGGAGGGUGGGG-GCGGg -3'
miRNA:   3'- aCGUaCCca----CCUUCCUACCCCuUGUC- -5'
29492 5' -54.8 NC_006151.1 + 84035 0.67 0.890308
Target:  5'- cUGCGUGuGcGUGGugcGGcUGGGGGugGGg -3'
miRNA:   3'- -ACGUAC-C-CACCuu-CCuACCCCUugUC- -5'
29492 5' -54.8 NC_006151.1 + 41364 0.67 0.889619
Target:  5'- cGuCGUGGaGgGGAGGGAaaggcggUGGGaGAGCGGg -3'
miRNA:   3'- aC-GUACC-CaCCUUCCU-------ACCC-CUUGUC- -5'
29492 5' -54.8 NC_006151.1 + 30638 0.67 0.876083
Target:  5'- cGgGUGGGUGG-GGGAgGGGGuuGAUGGc -3'
miRNA:   3'- aCgUACCCACCuUCCUaCCCC--UUGUC- -5'
29492 5' -54.8 NC_006151.1 + 33164 0.67 0.876083
Target:  5'- gGUcgGGGgcgGGGAGGAagggaggugugGGGGGAUGGc -3'
miRNA:   3'- aCGuaCCCa--CCUUCCUa----------CCCCUUGUC- -5'
29492 5' -54.8 NC_006151.1 + 10357 0.68 0.860951
Target:  5'- cGCGggaGGGgaggGGAGGGA-GGGGAGg-- -3'
miRNA:   3'- aCGUa--CCCa---CCUUCCUaCCCCUUguc -5'
29492 5' -54.8 NC_006151.1 + 41931 0.68 0.860951
Target:  5'- aUGCAgauuaGGG-GGAGGGGUuaugcagauuaGGGGGAgGGg -3'
miRNA:   3'- -ACGUa----CCCaCCUUCCUA-----------CCCCUUgUC- -5'
29492 5' -54.8 NC_006151.1 + 41975 0.68 0.860951
Target:  5'- aUGCAgauuaGGG-GGAGGGGUuaugcagauuaGGGGGAgGGg -3'
miRNA:   3'- -ACGUa----CCCaCCUUCCUA-----------CCCCUUgUC- -5'
29492 5' -54.8 NC_006151.1 + 42336 0.68 0.860951
Target:  5'- cUGCGacgGGaGUGGAGcGGA-GGGGAGgGGa -3'
miRNA:   3'- -ACGUa--CC-CACCUU-CCUaCCCCUUgUC- -5'
29492 5' -54.8 NC_006151.1 + 29277 0.68 0.860951
Target:  5'- ----cGGGUgagucGGGAGGGUGGGGugggAGCGGa -3'
miRNA:   3'- acguaCCCA-----CCUUCCUACCCC----UUGUC- -5'
29492 5' -54.8 NC_006151.1 + 34399 0.68 0.853059
Target:  5'- gGgGUGGG-GGAgAGGA-GGGGGugGGu -3'
miRNA:   3'- aCgUACCCaCCU-UCCUaCCCCUugUC- -5'
29492 5' -54.8 NC_006151.1 + 30971 0.68 0.853059
Target:  5'- aGCGggcgGGGgacggGGAcgGGGAcGGGGAGgAGg -3'
miRNA:   3'- aCGUa---CCCa----CCU--UCCUaCCCCUUgUC- -5'
29492 5' -54.8 NC_006151.1 + 110374 0.68 0.848224
Target:  5'- --gGUGGGgagaucggggggaauUGGggGGAuUGGGGAACu- -3'
miRNA:   3'- acgUACCC---------------ACCuuCCU-ACCCCUUGuc -5'
29492 5' -54.8 NC_006151.1 + 82882 0.68 0.828165
Target:  5'- gGCGcGGGUGGGAGGGgcgaGGGucACAc -3'
miRNA:   3'- aCGUaCCCACCUUCCUa---CCCcuUGUc -5'
29492 5' -54.8 NC_006151.1 + 12342 0.69 0.801604
Target:  5'- ---uUGGG-GGAAGGAggggcGGGGAGCGc -3'
miRNA:   3'- acguACCCaCCUUCCUa----CCCCUUGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.