miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29492 5' -54.8 NC_006151.1 + 143088 0.7 0.754271
Target:  5'- gUGCcaGGGUaGGAGGGGgauUGGGGuugGCAGg -3'
miRNA:   3'- -ACGuaCCCA-CCUUCCU---ACCCCu--UGUC- -5'
29492 5' -54.8 NC_006151.1 + 135121 0.66 0.932507
Target:  5'- cGCGcGGGgcgGGcuGGgcGGGGAcggGCAGa -3'
miRNA:   3'- aCGUaCCCa--CCuuCCuaCCCCU---UGUC- -5'
29492 5' -54.8 NC_006151.1 + 135000 0.66 0.92722
Target:  5'- cGCGUcuuGGcGGggGcGcgGGGGGGCAGc -3'
miRNA:   3'- aCGUAc--CCaCCuuC-CuaCCCCUUGUC- -5'
29492 5' -54.8 NC_006151.1 + 130933 0.67 0.897069
Target:  5'- cGCggGGGcggGGgcGGcgGGGGGucgcGCGGg -3'
miRNA:   3'- aCGuaCCCa--CCuuCCuaCCCCU----UGUC- -5'
29492 5' -54.8 NC_006151.1 + 121655 0.69 0.783084
Target:  5'- gGCGgacGGGcGGgcGGAgggGGGGAGCGa -3'
miRNA:   3'- aCGUa--CCCaCCuuCCUa--CCCCUUGUc -5'
29492 5' -54.8 NC_006151.1 + 110546 0.66 0.932507
Target:  5'- ---uUGGGgggacuUGGggGGAuUGGGGGACu- -3'
miRNA:   3'- acguACCC------ACCuuCCU-ACCCCUUGuc -5'
29492 5' -54.8 NC_006151.1 + 110463 0.69 0.773608
Target:  5'- gGCGgggauUGGGggacuugGGggGGAuUGGGGGACu- -3'
miRNA:   3'- aCGU-----ACCCa------CCuuCCU-ACCCCUUGuc -5'
29492 5' -54.8 NC_006151.1 + 110374 0.68 0.848224
Target:  5'- --gGUGGGgagaucggggggaauUGGggGGAuUGGGGAACu- -3'
miRNA:   3'- acgUACCC---------------ACCuuCCU-ACCCCUUGuc -5'
29492 5' -54.8 NC_006151.1 + 91675 0.71 0.683576
Target:  5'- cUGCGccGGGUGGugcgcguGGGUGGGGuGGCGGu -3'
miRNA:   3'- -ACGUa-CCCACCuu-----CCUACCCC-UUGUC- -5'
29492 5' -54.8 NC_006151.1 + 87792 0.75 0.488858
Target:  5'- aGUGUGGGUGGGagAGGGUGGGaGAggGCGc -3'
miRNA:   3'- aCGUACCCACCU--UCCUACCC-CU--UGUc -5'
29492 5' -54.8 NC_006151.1 + 84385 0.66 0.909867
Target:  5'- gGCGcGcGG-GGAcGGgcGGGGAGCGGg -3'
miRNA:   3'- aCGUaC-CCaCCUuCCuaCCCCUUGUC- -5'
29492 5' -54.8 NC_006151.1 + 84035 0.67 0.890308
Target:  5'- cUGCGUGuGcGUGGugcGGcUGGGGGugGGg -3'
miRNA:   3'- -ACGUAC-C-CACCuu-CCuACCCCUugUC- -5'
29492 5' -54.8 NC_006151.1 + 82882 0.68 0.828165
Target:  5'- gGCGcGGGUGGGAGGGgcgaGGGucACAc -3'
miRNA:   3'- aCGUaCCCACCUUCCUa---CCCcuUGUc -5'
29492 5' -54.8 NC_006151.1 + 78644 0.66 0.915899
Target:  5'- cGCGUGcgagcuGGUGGAGGcGGccGGGGcGCGGg -3'
miRNA:   3'- aCGUAC------CCACCUUC-CUa-CCCCuUGUC- -5'
29492 5' -54.8 NC_006151.1 + 75292 0.71 0.70414
Target:  5'- aGCGUGGcGUccacguccaGGAAGGA-GGGGuGGCAGa -3'
miRNA:   3'- aCGUACC-CA---------CCUUCCUaCCCC-UUGUC- -5'
29492 5' -54.8 NC_006151.1 + 72592 0.71 0.693885
Target:  5'- aGUcgGGGUG--AGGG-GGGGGGCAGg -3'
miRNA:   3'- aCGuaCCCACcuUCCUaCCCCUUGUC- -5'
29492 5' -54.8 NC_006151.1 + 72556 0.67 0.890308
Target:  5'- cGCGcGGccgcgcGGGAGGGUGGGG-GCGGg -3'
miRNA:   3'- aCGUaCCca----CCUUCCUACCCCuUGUC- -5'
29492 5' -54.8 NC_006151.1 + 71550 0.76 0.423167
Target:  5'- uUGCGaGGGaGGggGGGgcgaGGGGGACGGg -3'
miRNA:   3'- -ACGUaCCCaCCuuCCUa---CCCCUUGUC- -5'
29492 5' -54.8 NC_006151.1 + 51016 0.79 0.294896
Target:  5'- uUGUcgGGGUGGGauggggguGGGAUGGGGAugGu -3'
miRNA:   3'- -ACGuaCCCACCU--------UCCUACCCCUugUc -5'
29492 5' -54.8 NC_006151.1 + 45046 0.75 0.450691
Target:  5'- aGCGUGGGgggugUGGggGGAUGGG--ACGGc -3'
miRNA:   3'- aCGUACCC-----ACCuuCCUACCCcuUGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.