miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29493 3' -52.8 NC_006151.1 + 5511 0.66 0.970018
Target:  5'- -cGGGGCUCCGGGcgccaAGcGGccGAGGAUc -3'
miRNA:   3'- caUCCCGAGGUCU-----UC-CCaaCUCUUGu -5'
29493 3' -52.8 NC_006151.1 + 45319 0.66 0.970018
Target:  5'- --cGGGaggCUGGGAGGGUggcggugGAGGACGg -3'
miRNA:   3'- cauCCCga-GGUCUUCCCAa------CUCUUGU- -5'
29493 3' -52.8 NC_006151.1 + 44397 0.66 0.970018
Target:  5'- -gGGGGCgCCgAGGAGGGagGGGcGCGu -3'
miRNA:   3'- caUCCCGaGG-UCUUCCCaaCUCuUGU- -5'
29493 3' -52.8 NC_006151.1 + 8387 0.66 0.970018
Target:  5'- -gGGGGgUCCGGGAuGGGggGGGu-CAa -3'
miRNA:   3'- caUCCCgAGGUCUU-CCCaaCUCuuGU- -5'
29493 3' -52.8 NC_006151.1 + 4523 0.66 0.970018
Target:  5'- -cAGGGC-CCAGAGcGGGUccuGGGCGg -3'
miRNA:   3'- caUCCCGaGGUCUU-CCCAacuCUUGU- -5'
29493 3' -52.8 NC_006151.1 + 121661 0.66 0.970018
Target:  5'- --cGGGCgggCGGAGGGGggGAgcGAGCGg -3'
miRNA:   3'- cauCCCGag-GUCUUCCCaaCU--CUUGU- -5'
29493 3' -52.8 NC_006151.1 + 110028 0.66 0.96687
Target:  5'- cUGGGGC-CUggaggacgaGGAGGGGgacGAGGACGg -3'
miRNA:   3'- cAUCCCGaGG---------UCUUCCCaa-CUCUUGU- -5'
29493 3' -52.8 NC_006151.1 + 72577 0.66 0.96687
Target:  5'- -gGGGGCgggugaCAGAgucGGGGUgaggggGGGGGCAg -3'
miRNA:   3'- caUCCCGag----GUCU---UCCCAa-----CUCUUGU- -5'
29493 3' -52.8 NC_006151.1 + 44476 0.66 0.963496
Target:  5'- -gAGGGUggaCGGggGGGgugGGGGAUg -3'
miRNA:   3'- caUCCCGag-GUCuuCCCaa-CUCUUGu -5'
29493 3' -52.8 NC_006151.1 + 26246 0.66 0.963496
Target:  5'- -gAGGGCacaaCAGAGGGGagGGGGAgAg -3'
miRNA:   3'- caUCCCGag--GUCUUCCCaaCUCUUgU- -5'
29493 3' -52.8 NC_006151.1 + 27309 0.66 0.959889
Target:  5'- cGUGGGGgUCgAGgcGGGggacgGGGGGCu -3'
miRNA:   3'- -CAUCCCgAGgUCuuCCCaa---CUCUUGu -5'
29493 3' -52.8 NC_006151.1 + 17116 0.66 0.956044
Target:  5'- -gGGGGCUCCGGcGGcGGUgcugcGGGAGg- -3'
miRNA:   3'- caUCCCGAGGUCuUC-CCAa----CUCUUgu -5'
29493 3' -52.8 NC_006151.1 + 33246 0.67 0.94762
Target:  5'- -aGGGGgUCCgggGGAAGGGU--GGGGCGg -3'
miRNA:   3'- caUCCCgAGG---UCUUCCCAacUCUUGU- -5'
29493 3' -52.8 NC_006151.1 + 27481 0.67 0.943033
Target:  5'- -cGGGGggUCGGcGGGGUggUGGGAACGg -3'
miRNA:   3'- caUCCCgaGGUCuUCCCA--ACUCUUGU- -5'
29493 3' -52.8 NC_006151.1 + 10382 0.67 0.943033
Target:  5'- -aGGGGgUCgGGGggaagggaggGGGGggGAGAGCGg -3'
miRNA:   3'- caUCCCgAGgUCU----------UCCCaaCUCUUGU- -5'
29493 3' -52.8 NC_006151.1 + 110794 0.67 0.927742
Target:  5'- -cGGGGCUagGGcGGGGGgcGAGGGCAg -3'
miRNA:   3'- caUCCCGAggUC-UUCCCaaCUCUUGU- -5'
29493 3' -52.8 NC_006151.1 + 4914 0.68 0.903757
Target:  5'- -cAGGGCUCCccgAGcGGGGU-GAGcAGCGg -3'
miRNA:   3'- caUCCCGAGG---UCuUCCCAaCUC-UUGU- -5'
29493 3' -52.8 NC_006151.1 + 5019 0.69 0.890246
Target:  5'- gGgcGGGCUCCGGGgccGGGGccgGGGAGg- -3'
miRNA:   3'- -CauCCCGAGGUCU---UCCCaa-CUCUUgu -5'
29493 3' -52.8 NC_006151.1 + 27364 0.69 0.875758
Target:  5'- -cGGGGC-CCGGgcGGGUcgacgggcGAGAACGg -3'
miRNA:   3'- caUCCCGaGGUCuuCCCAa-------CUCUUGU- -5'
29493 3' -52.8 NC_006151.1 + 5806 0.69 0.875758
Target:  5'- -cGGGGCUgCcGAGGGGccggGAGAGCc -3'
miRNA:   3'- caUCCCGAgGuCUUCCCaa--CUCUUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.