miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29493 5' -52.8 NC_006151.1 + 43168 1.12 0.003618
Target:  5'- gUCUCUCACCCAACCCAAUCUUCGCCCc -3'
miRNA:   3'- -AGAGAGUGGGUUGGGUUAGAAGCGGG- -5'
29493 5' -52.8 NC_006151.1 + 40336 0.78 0.454438
Target:  5'- uUCUCUCcccucGCCCucgGCCCGGUCcUCGUCCu -3'
miRNA:   3'- -AGAGAG-----UGGGu--UGGGUUAGaAGCGGG- -5'
29493 5' -52.8 NC_006151.1 + 36984 0.77 0.512604
Target:  5'- cCUCUC-CCCGGCCCGc---UCGCCCu -3'
miRNA:   3'- aGAGAGuGGGUUGGGUuagaAGCGGG- -5'
29493 5' -52.8 NC_006151.1 + 8840 0.76 0.563293
Target:  5'- cCUCUC-CCCGugCguGUCUcgcUCGCCCu -3'
miRNA:   3'- aGAGAGuGGGUugGguUAGA---AGCGGG- -5'
29493 5' -52.8 NC_006151.1 + 141931 0.75 0.604778
Target:  5'- cCUCUCcacgUCCAuCCCGGUCUcUCGCCCc -3'
miRNA:   3'- aGAGAGu---GGGUuGGGUUAGA-AGCGGG- -5'
29493 5' -52.8 NC_006151.1 + 30474 0.75 0.615221
Target:  5'- cCUCUCGCCCAcgcGCCCucucccccCUUCGCgCa -3'
miRNA:   3'- aGAGAGUGGGU---UGGGuua-----GAAGCGgG- -5'
29493 5' -52.8 NC_006151.1 + 34228 0.75 0.63614
Target:  5'- cCUCUCuCCCGACgaggccgagCCGGUCUcgCGCCCc -3'
miRNA:   3'- aGAGAGuGGGUUG---------GGUUAGAa-GCGGG- -5'
29493 5' -52.8 NC_006151.1 + 35680 0.74 0.687189
Target:  5'- gUUCUCugCCAACCCGaggggauccgaccGUCUcCGCuCCg -3'
miRNA:   3'- aGAGAGugGGUUGGGU-------------UAGAaGCG-GG- -5'
29493 5' -52.8 NC_006151.1 + 17781 0.73 0.718962
Target:  5'- gCUCUC-CUCcGCCCg--CUUCGCCCc -3'
miRNA:   3'- aGAGAGuGGGuUGGGuuaGAAGCGGG- -5'
29493 5' -52.8 NC_006151.1 + 12091 0.73 0.739082
Target:  5'- cUCUCUCACCC-GCCCucccg-CGCUCu -3'
miRNA:   3'- -AGAGAGUGGGuUGGGuuagaaGCGGG- -5'
29493 5' -52.8 NC_006151.1 + 39513 0.72 0.745046
Target:  5'- aCUCUagcuccaucguggGCCCGGCCUg--CUUCGCCCg -3'
miRNA:   3'- aGAGAg------------UGGGUUGGGuuaGAAGCGGG- -5'
29493 5' -52.8 NC_006151.1 + 62831 0.72 0.758813
Target:  5'- gUCUCaCACCCAACCCGccacaUGCCCc -3'
miRNA:   3'- -AGAGaGUGGGUUGGGUuagaaGCGGG- -5'
29493 5' -52.8 NC_006151.1 + 38245 0.71 0.796792
Target:  5'- --cCUaCGCCgCGGCCC--UCUUCGCCCc -3'
miRNA:   3'- agaGA-GUGG-GUUGGGuuAGAAGCGGG- -5'
29493 5' -52.8 NC_006151.1 + 38348 0.71 0.832289
Target:  5'- gCUCUgGCCCGagcaGCCCGGccUCgUCGUCCc -3'
miRNA:   3'- aGAGAgUGGGU----UGGGUU--AGaAGCGGG- -5'
29493 5' -52.8 NC_006151.1 + 44874 0.7 0.856946
Target:  5'- cUCUCUCGCCCGACCUcggCggUGUgCg -3'
miRNA:   3'- -AGAGAGUGGGUUGGGuuaGaaGCGgG- -5'
29493 5' -52.8 NC_006151.1 + 119943 0.7 0.86475
Target:  5'- cCUCUCGCUgGACCCGuacUCgggcgcgcugUGCCCg -3'
miRNA:   3'- aGAGAGUGGgUUGGGUu--AGaa--------GCGGG- -5'
29493 5' -52.8 NC_006151.1 + 80628 0.7 0.872334
Target:  5'- gUCUCUC-CCC--CCCcGUCUcccccgCGCCCg -3'
miRNA:   3'- -AGAGAGuGGGuuGGGuUAGAa-----GCGGG- -5'
29493 5' -52.8 NC_006151.1 + 37908 0.7 0.872334
Target:  5'- cCUCUgCGCCCGcguCCCGccgcCUUCGCCg -3'
miRNA:   3'- aGAGA-GUGGGUu--GGGUua--GAAGCGGg -5'
29493 5' -52.8 NC_006151.1 + 10582 0.7 0.879694
Target:  5'- gCUCggcgGCCCGGCCCuucCUcCGCCCu -3'
miRNA:   3'- aGAGag--UGGGUUGGGuuaGAaGCGGG- -5'
29493 5' -52.8 NC_006151.1 + 62787 0.69 0.886824
Target:  5'- -aUCUCGCCCcACCCcacggcucUCUUCcCCCg -3'
miRNA:   3'- agAGAGUGGGuUGGGuu------AGAAGcGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.