miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29493 5' -52.8 NC_006151.1 + 6913 0.67 0.958807
Target:  5'- cCUCUCGCgucuacuuugcauguCCGGCCCcgagggcgccAUCUUgGCCCc -3'
miRNA:   3'- aGAGAGUG---------------GGUUGGGu---------UAGAAgCGGG- -5'
29493 5' -52.8 NC_006151.1 + 6994 0.67 0.965821
Target:  5'- cCUCUCGCgucuacuuugcauguCCGGCCCccgcggcggccAUCUcggcUCGCCCg -3'
miRNA:   3'- aGAGAGUG---------------GGUUGGGu----------UAGA----AGCGGG- -5'
29493 5' -52.8 NC_006151.1 + 7083 0.67 0.961007
Target:  5'- cCUCUgauuugcaUGCCCGGCCCGcucugcggccAUCUUgGCCg -3'
miRNA:   3'- aGAGA--------GUGGGUUGGGU----------UAGAAgCGGg -5'
29493 5' -52.8 NC_006151.1 + 7868 0.66 0.967751
Target:  5'- cCUCUCcCCCAcCCCucuAUCUcucUCuCCCg -3'
miRNA:   3'- aGAGAGuGGGUuGGGu--UAGA---AGcGGG- -5'
29493 5' -52.8 NC_006151.1 + 8761 0.68 0.929963
Target:  5'- -gUCUCGCCUuuccCCCAGU--UCGCCUc -3'
miRNA:   3'- agAGAGUGGGuu--GGGUUAgaAGCGGG- -5'
29493 5' -52.8 NC_006151.1 + 8840 0.76 0.563293
Target:  5'- cCUCUC-CCCGugCguGUCUcgcUCGCCCu -3'
miRNA:   3'- aGAGAGuGGGUugGguUAGA---AGCGGG- -5'
29493 5' -52.8 NC_006151.1 + 9100 0.68 0.924543
Target:  5'- cCUCcccgCcCCCGACCCGccUCgcacUCGCCCg -3'
miRNA:   3'- aGAGa---GuGGGUUGGGUu-AGa---AGCGGG- -5'
29493 5' -52.8 NC_006151.1 + 9688 0.68 0.929963
Target:  5'- cCUC-CGCCCGGCCgCGGg---UGCCCg -3'
miRNA:   3'- aGAGaGUGGGUUGG-GUUagaaGCGGG- -5'
29493 5' -52.8 NC_006151.1 + 10582 0.7 0.879694
Target:  5'- gCUCggcgGCCCGGCCCuucCUcCGCCCu -3'
miRNA:   3'- aGAGag--UGGGUUGGGuuaGAaGCGGG- -5'
29493 5' -52.8 NC_006151.1 + 11013 0.67 0.94473
Target:  5'- --gCUCGCCC-GCCCGcUCgcUCGCCg -3'
miRNA:   3'- agaGAGUGGGuUGGGUuAGa-AGCGGg -5'
29493 5' -52.8 NC_006151.1 + 12091 0.73 0.739082
Target:  5'- cUCUCUCACCC-GCCCucccg-CGCUCu -3'
miRNA:   3'- -AGAGAGUGGGuUGGGuuagaaGCGGG- -5'
29493 5' -52.8 NC_006151.1 + 12727 0.66 0.973623
Target:  5'- aUUCaUCGCCCcGCUCAuccGUCUucaUCGCCg -3'
miRNA:   3'- aGAG-AGUGGGuUGGGU---UAGA---AGCGGg -5'
29493 5' -52.8 NC_006151.1 + 14686 0.68 0.918872
Target:  5'- cCUCgcccaccCACCCGGCCCccGUCccaGCCCa -3'
miRNA:   3'- aGAGa------GUGGGUUGGGu-UAGaagCGGG- -5'
29493 5' -52.8 NC_006151.1 + 14800 0.66 0.967751
Target:  5'- gCUCgacCGCCCGcccccgACCCAccgcGUCcgccgCGCCCa -3'
miRNA:   3'- aGAGa--GUGGGU------UGGGU----UAGaa---GCGGG- -5'
29493 5' -52.8 NC_006151.1 + 14888 0.68 0.939575
Target:  5'- gUUCUCGCCCGucgacccGCCCGGgccccgGCCCa -3'
miRNA:   3'- aGAGAGUGGGU-------UGGGUUagaag-CGGG- -5'
29493 5' -52.8 NC_006151.1 + 15265 0.69 0.900373
Target:  5'- gCUCUCGCCCGAgCaGAg---CGCCCc -3'
miRNA:   3'- aGAGAGUGGGUUgGgUUagaaGCGGG- -5'
29493 5' -52.8 NC_006151.1 + 16006 0.66 0.973623
Target:  5'- cCUCUCcCCCucCCC--UCUguugUGCCCu -3'
miRNA:   3'- aGAGAGuGGGuuGGGuuAGAa---GCGGG- -5'
29493 5' -52.8 NC_006151.1 + 17781 0.73 0.718962
Target:  5'- gCUCUC-CUCcGCCCg--CUUCGCCCc -3'
miRNA:   3'- aGAGAGuGGGuUGGGuuaGAAGCGGG- -5'
29493 5' -52.8 NC_006151.1 + 24849 0.67 0.957294
Target:  5'- cUUCUgGCCCAccuucagcaccACCguGUCcgccUCGCCCg -3'
miRNA:   3'- aGAGAgUGGGU-----------UGGguUAGa---AGCGGG- -5'
29493 5' -52.8 NC_006151.1 + 25711 0.67 0.949159
Target:  5'- gCUCUCGCUCuggcACCCGAUgacaCGCCUc -3'
miRNA:   3'- aGAGAGUGGGu---UGGGUUAgaa-GCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.