miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29493 5' -52.8 NC_006151.1 + 141931 0.75 0.604778
Target:  5'- cCUCUCcacgUCCAuCCCGGUCUcUCGCCCc -3'
miRNA:   3'- aGAGAGu---GGGUuGGGUUAGA-AGCGGG- -5'
29493 5' -52.8 NC_006151.1 + 140692 0.67 0.957294
Target:  5'- cCUCUC-CCCAucuCCCcAUCUccUCuCCCa -3'
miRNA:   3'- aGAGAGuGGGUu--GGGuUAGA--AGcGGG- -5'
29493 5' -52.8 NC_006151.1 + 128590 0.67 0.947856
Target:  5'- aUCgUCUCGCgCGGCCCGcgCgccacccgcggcgugCGCCCc -3'
miRNA:   3'- -AG-AGAGUGgGUUGGGUuaGaa-------------GCGGG- -5'
29493 5' -52.8 NC_006151.1 + 125689 0.69 0.900373
Target:  5'- -aUCUCGCgCGACCUcAUCga-GCCCu -3'
miRNA:   3'- agAGAGUGgGUUGGGuUAGaagCGGG- -5'
29493 5' -52.8 NC_006151.1 + 125246 0.67 0.953346
Target:  5'- --gCUCcCCCGGCCCGG-CggggaCGCCCg -3'
miRNA:   3'- agaGAGuGGGUUGGGUUaGaa---GCGGG- -5'
29493 5' -52.8 NC_006151.1 + 119943 0.7 0.86475
Target:  5'- cCUCUCGCUgGACCCGuacUCgggcgcgcugUGCCCg -3'
miRNA:   3'- aGAGAGUGGgUUGGGUu--AGaa--------GCGGG- -5'
29493 5' -52.8 NC_006151.1 + 117977 0.69 0.900373
Target:  5'- uUCUCUCuCCCGcUCCcGUCUcgucUCGCCg -3'
miRNA:   3'- -AGAGAGuGGGUuGGGuUAGA----AGCGGg -5'
29493 5' -52.8 NC_006151.1 + 117907 0.69 0.900373
Target:  5'- cUCUCUuCACCCcgccgccgGACCCG-UC--CGCCCg -3'
miRNA:   3'- -AGAGA-GUGGG--------UUGGGUuAGaaGCGGG- -5'
29493 5' -52.8 NC_006151.1 + 114282 0.68 0.918872
Target:  5'- gCUCgcgCACCCGgaGCUCu-UUUUCGCCUa -3'
miRNA:   3'- aGAGa--GUGGGU--UGGGuuAGAAGCGGG- -5'
29493 5' -52.8 NC_006151.1 + 112531 0.68 0.924543
Target:  5'- cCUCUU-CCgCGAgCUGAUCUUCGCCg -3'
miRNA:   3'- aGAGAGuGG-GUUgGGUUAGAAGCGGg -5'
29493 5' -52.8 NC_006151.1 + 109581 0.66 0.967751
Target:  5'- --aCUCugCCGGCCCGcccgcgcUCUUCaCCCc -3'
miRNA:   3'- agaGAGugGGUUGGGUu------AGAAGcGGG- -5'
29493 5' -52.8 NC_006151.1 + 102006 0.69 0.906786
Target:  5'- cCgcgCACCCGcgaGCCCAugggCUUCGCCg -3'
miRNA:   3'- aGagaGUGGGU---UGGGUua--GAAGCGGg -5'
29493 5' -52.8 NC_006151.1 + 99793 0.66 0.973623
Target:  5'- cCUCgaggCAUggCCGACCCGucCUUCGCgCCc -3'
miRNA:   3'- aGAGa---GUG--GGUUGGGUuaGAAGCG-GG- -5'
29493 5' -52.8 NC_006151.1 + 90957 0.67 0.964491
Target:  5'- gCUCcgUCGCgCCGACCgcGUCgaCGCCCu -3'
miRNA:   3'- aGAG--AGUG-GGUUGGguUAGaaGCGGG- -5'
29493 5' -52.8 NC_006151.1 + 86812 0.69 0.906786
Target:  5'- cCUCcccggCGCCCGGCCCAGUg--CGgCCa -3'
miRNA:   3'- aGAGa----GUGGGUUGGGUUAgaaGCgGG- -5'
29493 5' -52.8 NC_006151.1 + 80628 0.7 0.872334
Target:  5'- gUCUCUC-CCC--CCCcGUCUcccccgCGCCCg -3'
miRNA:   3'- -AGAGAGuGGGuuGGGuUAGAa-----GCGGG- -5'
29493 5' -52.8 NC_006151.1 + 65921 0.67 0.948727
Target:  5'- cCUCgucgggCGCCCcgccgccGGCCCAGUCcUCGUCg -3'
miRNA:   3'- aGAGa-----GUGGG-------UUGGGUUAGaAGCGGg -5'
29493 5' -52.8 NC_006151.1 + 63812 0.67 0.961007
Target:  5'- --cCUCGCCgGGCCCcgggg-CGCCCu -3'
miRNA:   3'- agaGAGUGGgUUGGGuuagaaGCGGG- -5'
29493 5' -52.8 NC_006151.1 + 62831 0.72 0.758813
Target:  5'- gUCUCaCACCCAACCCGccacaUGCCCc -3'
miRNA:   3'- -AGAGaGUGGGUUGGGUuagaaGCGGG- -5'
29493 5' -52.8 NC_006151.1 + 62787 0.69 0.886824
Target:  5'- -aUCUCGCCCcACCCcacggcucUCUUCcCCCg -3'
miRNA:   3'- agAGAGUGGGuUGGGuu------AGAAGcGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.