miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29493 5' -52.8 NC_006151.1 + 26409 0.68 0.929963
Target:  5'- cCUcCUCGCCCu-CUCcGUCUUCGUCUu -3'
miRNA:   3'- aGA-GAGUGGGuuGGGuUAGAAGCGGG- -5'
29493 5' -52.8 NC_006151.1 + 26617 0.66 0.973623
Target:  5'- -gUCgUCGCCCAcgcugGCCCcGUCaaagUCGUCCc -3'
miRNA:   3'- agAG-AGUGGGU-----UGGGuUAGa---AGCGGG- -5'
29493 5' -52.8 NC_006151.1 + 29846 0.68 0.934628
Target:  5'- cCUCacccCACCCAGCCCccUCUccaguucccgcucUCGCUCu -3'
miRNA:   3'- aGAGa---GUGGGUUGGGuuAGA-------------AGCGGG- -5'
29493 5' -52.8 NC_006151.1 + 30474 0.75 0.615221
Target:  5'- cCUCUCGCCCAcgcGCCCucucccccCUUCGCgCa -3'
miRNA:   3'- aGAGAGUGGGU---UGGGuua-----GAAGCGgG- -5'
29493 5' -52.8 NC_006151.1 + 34228 0.75 0.63614
Target:  5'- cCUCUCuCCCGACgaggccgagCCGGUCUcgCGCCCc -3'
miRNA:   3'- aGAGAGuGGGUUG---------GGUUAGAa-GCGGG- -5'
29493 5' -52.8 NC_006151.1 + 35680 0.74 0.687189
Target:  5'- gUUCUCugCCAACCCGaggggauccgaccGUCUcCGCuCCg -3'
miRNA:   3'- aGAGAGugGGUUGGGU-------------UAGAaGCG-GG- -5'
29493 5' -52.8 NC_006151.1 + 35762 0.68 0.929963
Target:  5'- cCUCgacggaCGCCCGACCCAccgaggCUcUCgGCCCg -3'
miRNA:   3'- aGAGa-----GUGGGUUGGGUua----GA-AG-CGGG- -5'
29493 5' -52.8 NC_006151.1 + 36984 0.77 0.512604
Target:  5'- cCUCUC-CCCGGCCCGc---UCGCCCu -3'
miRNA:   3'- aGAGAGuGGGUUGGGUuagaAGCGGG- -5'
29493 5' -52.8 NC_006151.1 + 37733 0.66 0.967751
Target:  5'- ----cCGCCCAggACCCGcUCUggGCCCu -3'
miRNA:   3'- agagaGUGGGU--UGGGUuAGAagCGGG- -5'
29493 5' -52.8 NC_006151.1 + 37908 0.7 0.872334
Target:  5'- cCUCUgCGCCCGcguCCCGccgcCUUCGCCg -3'
miRNA:   3'- aGAGA-GUGGGUu--GGGUua--GAAGCGGg -5'
29493 5' -52.8 NC_006151.1 + 38245 0.71 0.796792
Target:  5'- --cCUaCGCCgCGGCCC--UCUUCGCCCc -3'
miRNA:   3'- agaGA-GUGG-GUUGGGuuAGAAGCGGG- -5'
29493 5' -52.8 NC_006151.1 + 38348 0.71 0.832289
Target:  5'- gCUCUgGCCCGagcaGCCCGGccUCgUCGUCCc -3'
miRNA:   3'- aGAGAgUGGGU----UGGGUU--AGaAGCGGG- -5'
29493 5' -52.8 NC_006151.1 + 38795 0.69 0.893718
Target:  5'- gCUCggGCCCAuGCCCGAgcaccccgCGCCCg -3'
miRNA:   3'- aGAGagUGGGU-UGGGUUagaa----GCGGG- -5'
29493 5' -52.8 NC_006151.1 + 38950 0.67 0.957294
Target:  5'- aCUCUggCGCCCGGCgCucacCUUCGaCCCg -3'
miRNA:   3'- aGAGA--GUGGGUUGgGuua-GAAGC-GGG- -5'
29493 5' -52.8 NC_006151.1 + 39109 0.68 0.935134
Target:  5'- gCUCUgCGCCgAGCCCGccgagggCGCCCc -3'
miRNA:   3'- aGAGA-GUGGgUUGGGUuagaa--GCGGG- -5'
29493 5' -52.8 NC_006151.1 + 39169 0.66 0.978678
Target:  5'- cCUCUCGgCgCuGCUCGccgcCUUCGCCCa -3'
miRNA:   3'- aGAGAGUgG-GuUGGGUua--GAAGCGGG- -5'
29493 5' -52.8 NC_006151.1 + 39513 0.72 0.745046
Target:  5'- aCUCUagcuccaucguggGCCCGGCCUg--CUUCGCCCg -3'
miRNA:   3'- aGAGAg------------UGGGUUGGGuuaGAAGCGGG- -5'
29493 5' -52.8 NC_006151.1 + 39811 0.69 0.912953
Target:  5'- gCUCggCGCCCcgcugcGGCCCG-UCUUCGUCUc -3'
miRNA:   3'- aGAGa-GUGGG------UUGGGUuAGAAGCGGG- -5'
29493 5' -52.8 NC_006151.1 + 40336 0.78 0.454438
Target:  5'- uUCUCUCcccucGCCCucgGCCCGGUCcUCGUCCu -3'
miRNA:   3'- -AGAGAG-----UGGGu--UGGGUUAGaAGCGGG- -5'
29493 5' -52.8 NC_006151.1 + 43038 0.67 0.957294
Target:  5'- cCUCgaucgCGCCCAGCCaccgCcgUCGCCa -3'
miRNA:   3'- aGAGa----GUGGGUUGGguuaGa-AGCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.