Results 41 - 60 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29493 | 5' | -52.8 | NC_006151.1 | + | 39811 | 0.69 | 0.912953 |
Target: 5'- gCUCggCGCCCcgcugcGGCCCG-UCUUCGUCUc -3' miRNA: 3'- aGAGa-GUGGG------UUGGGUuAGAAGCGGG- -5' |
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29493 | 5' | -52.8 | NC_006151.1 | + | 86812 | 0.69 | 0.906786 |
Target: 5'- cCUCcccggCGCCCGGCCCAGUg--CGgCCa -3' miRNA: 3'- aGAGa----GUGGGUUGGGUUAgaaGCgGG- -5' |
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29493 | 5' | -52.8 | NC_006151.1 | + | 47410 | 0.69 | 0.906786 |
Target: 5'- cCUggCGCCCGGCCaCcAUCUgagUGCCCa -3' miRNA: 3'- aGAgaGUGGGUUGG-GuUAGAa--GCGGG- -5' |
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29493 | 5' | -52.8 | NC_006151.1 | + | 102006 | 0.69 | 0.906786 |
Target: 5'- cCgcgCACCCGcgaGCCCAugggCUUCGCCg -3' miRNA: 3'- aGagaGUGGGU---UGGGUua--GAAGCGGg -5' |
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29493 | 5' | -52.8 | NC_006151.1 | + | 117977 | 0.69 | 0.900373 |
Target: 5'- uUCUCUCuCCCGcUCCcGUCUcgucUCGCCg -3' miRNA: 3'- -AGAGAGuGGGUuGGGuUAGA----AGCGGg -5' |
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29493 | 5' | -52.8 | NC_006151.1 | + | 15265 | 0.69 | 0.900373 |
Target: 5'- gCUCUCGCCCGAgCaGAg---CGCCCc -3' miRNA: 3'- aGAGAGUGGGUUgGgUUagaaGCGGG- -5' |
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29493 | 5' | -52.8 | NC_006151.1 | + | 58537 | 0.69 | 0.900373 |
Target: 5'- cCUCgcCGCCCucCCCGGucgucuccUCUUCGCCg -3' miRNA: 3'- aGAGa-GUGGGuuGGGUU--------AGAAGCGGg -5' |
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29493 | 5' | -52.8 | NC_006151.1 | + | 117907 | 0.69 | 0.900373 |
Target: 5'- cUCUCUuCACCCcgccgccgGACCCG-UC--CGCCCg -3' miRNA: 3'- -AGAGA-GUGGG--------UUGGGUuAGaaGCGGG- -5' |
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29493 | 5' | -52.8 | NC_006151.1 | + | 125689 | 0.69 | 0.900373 |
Target: 5'- -aUCUCGCgCGACCUcAUCga-GCCCu -3' miRNA: 3'- agAGAGUGgGUUGGGuUAGaagCGGG- -5' |
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29493 | 5' | -52.8 | NC_006151.1 | + | 38795 | 0.69 | 0.893718 |
Target: 5'- gCUCggGCCCAuGCCCGAgcaccccgCGCCCg -3' miRNA: 3'- aGAGagUGGGU-UGGGUUagaa----GCGGG- -5' |
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29493 | 5' | -52.8 | NC_006151.1 | + | 62787 | 0.69 | 0.886824 |
Target: 5'- -aUCUCGCCCcACCCcacggcucUCUUCcCCCg -3' miRNA: 3'- agAGAGUGGGuUGGGuu------AGAAGcGGG- -5' |
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29493 | 5' | -52.8 | NC_006151.1 | + | 10582 | 0.7 | 0.879694 |
Target: 5'- gCUCggcgGCCCGGCCCuucCUcCGCCCu -3' miRNA: 3'- aGAGag--UGGGUUGGGuuaGAaGCGGG- -5' |
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29493 | 5' | -52.8 | NC_006151.1 | + | 80628 | 0.7 | 0.872334 |
Target: 5'- gUCUCUC-CCC--CCCcGUCUcccccgCGCCCg -3' miRNA: 3'- -AGAGAGuGGGuuGGGuUAGAa-----GCGGG- -5' |
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29493 | 5' | -52.8 | NC_006151.1 | + | 37908 | 0.7 | 0.872334 |
Target: 5'- cCUCUgCGCCCGcguCCCGccgcCUUCGCCg -3' miRNA: 3'- aGAGA-GUGGGUu--GGGUua--GAAGCGGg -5' |
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29493 | 5' | -52.8 | NC_006151.1 | + | 119943 | 0.7 | 0.86475 |
Target: 5'- cCUCUCGCUgGACCCGuacUCgggcgcgcugUGCCCg -3' miRNA: 3'- aGAGAGUGGgUUGGGUu--AGaa--------GCGGG- -5' |
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29493 | 5' | -52.8 | NC_006151.1 | + | 44874 | 0.7 | 0.856946 |
Target: 5'- cUCUCUCGCCCGACCUcggCggUGUgCg -3' miRNA: 3'- -AGAGAGUGGGUUGGGuuaGaaGCGgG- -5' |
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29493 | 5' | -52.8 | NC_006151.1 | + | 38348 | 0.71 | 0.832289 |
Target: 5'- gCUCUgGCCCGagcaGCCCGGccUCgUCGUCCc -3' miRNA: 3'- aGAGAgUGGGU----UGGGUU--AGaAGCGGG- -5' |
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29493 | 5' | -52.8 | NC_006151.1 | + | 38245 | 0.71 | 0.796792 |
Target: 5'- --cCUaCGCCgCGGCCC--UCUUCGCCCc -3' miRNA: 3'- agaGA-GUGG-GUUGGGuuAGAAGCGGG- -5' |
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29493 | 5' | -52.8 | NC_006151.1 | + | 62831 | 0.72 | 0.758813 |
Target: 5'- gUCUCaCACCCAACCCGccacaUGCCCc -3' miRNA: 3'- -AGAGaGUGGGUUGGGUuagaaGCGGG- -5' |
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29493 | 5' | -52.8 | NC_006151.1 | + | 39513 | 0.72 | 0.745046 |
Target: 5'- aCUCUagcuccaucguggGCCCGGCCUg--CUUCGCCCg -3' miRNA: 3'- aGAGAg------------UGGGUUGGGuuaGAAGCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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