miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29493 5' -52.8 NC_006151.1 + 125246 0.67 0.953346
Target:  5'- --gCUCcCCCGGCCCGG-CggggaCGCCCg -3'
miRNA:   3'- agaGAGuGGGUUGGGUUaGaa---GCGGG- -5'
29493 5' -52.8 NC_006151.1 + 51084 0.67 0.953346
Target:  5'- cUCcgCUCGCCCGcCCC--UCUcCGCCUc -3'
miRNA:   3'- -AGa-GAGUGGGUuGGGuuAGAaGCGGG- -5'
29493 5' -52.8 NC_006151.1 + 54197 0.67 0.953346
Target:  5'- aUC-CUCAUCCAcCCCAcgCcgCGCaCCa -3'
miRNA:   3'- -AGaGAGUGGGUuGGGUuaGaaGCG-GG- -5'
29493 5' -52.8 NC_006151.1 + 25711 0.67 0.949159
Target:  5'- gCUCUCGCUCuggcACCCGAUgacaCGCCUc -3'
miRNA:   3'- aGAGAGUGGGu---UGGGUUAgaa-GCGGG- -5'
29493 5' -52.8 NC_006151.1 + 65921 0.67 0.948727
Target:  5'- cCUCgucgggCGCCCcgccgccGGCCCAGUCcUCGUCg -3'
miRNA:   3'- aGAGa-----GUGGG-------UUGGGUUAGaAGCGGg -5'
29493 5' -52.8 NC_006151.1 + 128590 0.67 0.947856
Target:  5'- aUCgUCUCGCgCGGCCCGcgCgccacccgcggcgugCGCCCc -3'
miRNA:   3'- -AG-AGAGUGgGUUGGGUuaGaa-------------GCGGG- -5'
29493 5' -52.8 NC_006151.1 + 11013 0.67 0.94473
Target:  5'- --gCUCGCCC-GCCCGcUCgcUCGCCg -3'
miRNA:   3'- agaGAGUGGGuUGGGUuAGa-AGCGGg -5'
29493 5' -52.8 NC_006151.1 + 14888 0.68 0.939575
Target:  5'- gUUCUCGCCCGucgacccGCCCGGgccccgGCCCa -3'
miRNA:   3'- aGAGAGUGGGU-------UGGGUUagaag-CGGG- -5'
29493 5' -52.8 NC_006151.1 + 39109 0.68 0.935134
Target:  5'- gCUCUgCGCCgAGCCCGccgagggCGCCCc -3'
miRNA:   3'- aGAGA-GUGGgUUGGGUuagaa--GCGGG- -5'
29493 5' -52.8 NC_006151.1 + 29846 0.68 0.934628
Target:  5'- cCUCacccCACCCAGCCCccUCUccaguucccgcucUCGCUCu -3'
miRNA:   3'- aGAGa---GUGGGUUGGGuuAGA-------------AGCGGG- -5'
29493 5' -52.8 NC_006151.1 + 9688 0.68 0.929963
Target:  5'- cCUC-CGCCCGGCCgCGGg---UGCCCg -3'
miRNA:   3'- aGAGaGUGGGUUGG-GUUagaaGCGGG- -5'
29493 5' -52.8 NC_006151.1 + 35762 0.68 0.929963
Target:  5'- cCUCgacggaCGCCCGACCCAccgaggCUcUCgGCCCg -3'
miRNA:   3'- aGAGa-----GUGGGUUGGGUua----GA-AG-CGGG- -5'
29493 5' -52.8 NC_006151.1 + 8761 0.68 0.929963
Target:  5'- -gUCUCGCCUuuccCCCAGU--UCGCCUc -3'
miRNA:   3'- agAGAGUGGGuu--GGGUUAgaAGCGGG- -5'
29493 5' -52.8 NC_006151.1 + 26409 0.68 0.929963
Target:  5'- cCUcCUCGCCCu-CUCcGUCUUCGUCUu -3'
miRNA:   3'- aGA-GAGUGGGuuGGGuUAGAAGCGGG- -5'
29493 5' -52.8 NC_006151.1 + 112531 0.68 0.924543
Target:  5'- cCUCUU-CCgCGAgCUGAUCUUCGCCg -3'
miRNA:   3'- aGAGAGuGG-GUUgGGUUAGAAGCGGg -5'
29493 5' -52.8 NC_006151.1 + 9100 0.68 0.924543
Target:  5'- cCUCcccgCcCCCGACCCGccUCgcacUCGCCCg -3'
miRNA:   3'- aGAGa---GuGGGUUGGGUu-AGa---AGCGGG- -5'
29493 5' -52.8 NC_006151.1 + 51472 0.68 0.918872
Target:  5'- -gUCU-GCCCAcaGCCCGA-CUgCGCCCa -3'
miRNA:   3'- agAGAgUGGGU--UGGGUUaGAaGCGGG- -5'
29493 5' -52.8 NC_006151.1 + 14686 0.68 0.918872
Target:  5'- cCUCgcccaccCACCCGGCCCccGUCccaGCCCa -3'
miRNA:   3'- aGAGa------GUGGGUUGGGu-UAGaagCGGG- -5'
29493 5' -52.8 NC_006151.1 + 44969 0.68 0.918872
Target:  5'- cCUCUCACCaccguuGCCCcg----CGCCCg -3'
miRNA:   3'- aGAGAGUGGgu----UGGGuuagaaGCGGG- -5'
29493 5' -52.8 NC_006151.1 + 114282 0.68 0.918872
Target:  5'- gCUCgcgCACCCGgaGCUCu-UUUUCGCCUa -3'
miRNA:   3'- aGAGa--GUGGGU--UGGGuuAGAAGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.