miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29494 5' -56.2 NC_006151.1 + 43020 1.1 0.002565
Target:  5'- uGGCACCCCUCCACAUCUCCUCGAUCGc -3'
miRNA:   3'- -CCGUGGGGAGGUGUAGAGGAGCUAGC- -5'
29494 5' -56.2 NC_006151.1 + 40297 0.76 0.403203
Target:  5'- --gGCCCCUCCACcggCUCCUCGAg-- -3'
miRNA:   3'- ccgUGGGGAGGUGua-GAGGAGCUagc -5'
29494 5' -56.2 NC_006151.1 + 128776 0.75 0.429232
Target:  5'- cGUACCgCUCCACGg--CCUCGGUCGc -3'
miRNA:   3'- cCGUGGgGAGGUGUagaGGAGCUAGC- -5'
29494 5' -56.2 NC_006151.1 + 23128 0.73 0.561992
Target:  5'- cGCGCCCCUCCucCGUCgccgggcCCUCGG-CGg -3'
miRNA:   3'- cCGUGGGGAGGu-GUAGa------GGAGCUaGC- -5'
29494 5' -56.2 NC_006151.1 + 129268 0.72 0.590123
Target:  5'- aGGCAUCCUUCCACGaagcgcggcgcgUUCCUCGggCGc -3'
miRNA:   3'- -CCGUGGGGAGGUGUa-----------GAGGAGCuaGC- -5'
29494 5' -56.2 NC_006151.1 + 68880 0.72 0.592143
Target:  5'- gGGCGCgCCCggCCACGUCgaggacggCCUCGcgGUCGc -3'
miRNA:   3'- -CCGUG-GGGa-GGUGUAGa-------GGAGC--UAGC- -5'
29494 5' -56.2 NC_006151.1 + 84924 0.72 0.612398
Target:  5'- cGGCGCCgCCUCCGgCGUgCUCUUCGGc-- -3'
miRNA:   3'- -CCGUGG-GGAGGU-GUA-GAGGAGCUagc -5'
29494 5' -56.2 NC_006151.1 + 135054 0.72 0.622551
Target:  5'- cGGUcCCCCUCCuCGUCuucccccgccUCCUCGggCGg -3'
miRNA:   3'- -CCGuGGGGAGGuGUAG----------AGGAGCuaGC- -5'
29494 5' -56.2 NC_006151.1 + 116075 0.71 0.632711
Target:  5'- uGGCGCCCUgguagCCGCcgccGUCgUCCUCG-UCGg -3'
miRNA:   3'- -CCGUGGGGa----GGUG----UAG-AGGAGCuAGC- -5'
29494 5' -56.2 NC_006151.1 + 9216 0.71 0.641855
Target:  5'- cGGCAgcaucccCCCCUCCcCGUCgUCCUCGGcCa -3'
miRNA:   3'- -CCGU-------GGGGAGGuGUAG-AGGAGCUaGc -5'
29494 5' -56.2 NC_006151.1 + 138503 0.71 0.653023
Target:  5'- gGGCGCCCg-CUGCAcCUCCUCGuccUCGg -3'
miRNA:   3'- -CCGUGGGgaGGUGUaGAGGAGCu--AGC- -5'
29494 5' -56.2 NC_006151.1 + 37659 0.7 0.683345
Target:  5'- cGCGCCCCacggCCACggCUCCUUcAUCa -3'
miRNA:   3'- cCGUGGGGa---GGUGuaGAGGAGcUAGc -5'
29494 5' -56.2 NC_006151.1 + 141912 0.7 0.697381
Target:  5'- cGCGCCCCgcggccguuccccucUCCACGUCcaUCC-CGGUCu -3'
miRNA:   3'- cCGUGGGG---------------AGGUGUAG--AGGaGCUAGc -5'
29494 5' -56.2 NC_006151.1 + 39010 0.7 0.703366
Target:  5'- cGGCGCCCCgcuccgCCGCcgCgccgCCUgGAUgCGg -3'
miRNA:   3'- -CCGUGGGGa-----GGUGuaGa---GGAgCUA-GC- -5'
29494 5' -56.2 NC_006151.1 + 141567 0.7 0.713292
Target:  5'- cGGCGCgaUCCUCCGCcgCUCCUCccccCGg -3'
miRNA:   3'- -CCGUG--GGGAGGUGuaGAGGAGcua-GC- -5'
29494 5' -56.2 NC_006151.1 + 28134 0.7 0.713292
Target:  5'- gGGCGCg-CUCCGCGccUCUCC-CGGUCGa -3'
miRNA:   3'- -CCGUGggGAGGUGU--AGAGGaGCUAGC- -5'
29494 5' -56.2 NC_006151.1 + 65928 0.7 0.713292
Target:  5'- gGGCGCCCCgCCGCcggCccagUCCUCG-UCGa -3'
miRNA:   3'- -CCGUGGGGaGGUGua-G----AGGAGCuAGC- -5'
29494 5' -56.2 NC_006151.1 + 50353 0.7 0.732931
Target:  5'- cGGCcUCCCgCCGCGUCUCCgccggCGGgggCGa -3'
miRNA:   3'- -CCGuGGGGaGGUGUAGAGGa----GCUa--GC- -5'
29494 5' -56.2 NC_006151.1 + 20932 0.69 0.751269
Target:  5'- cGGCgaggGCCCCUCCagaaacaGCAggUCCcgUCGAUCGu -3'
miRNA:   3'- -CCG----UGGGGAGG-------UGUagAGG--AGCUAGC- -5'
29494 5' -56.2 NC_006151.1 + 131415 0.69 0.752225
Target:  5'- gGGCuCCuCCUCCuCGcugcUCUCCUCG-UCGg -3'
miRNA:   3'- -CCGuGG-GGAGGuGU----AGAGGAGCuAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.