miRNA display CGI


Results 1 - 20 of 57 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29494 5' -56.2 NC_006151.1 + 7876 0.67 0.871771
Target:  5'- -cCACCCCUCUAUcucucUCUCC-CGGUCc -3'
miRNA:   3'- ccGUGGGGAGGUGu----AGAGGaGCUAGc -5'
29494 5' -56.2 NC_006151.1 + 9216 0.71 0.641855
Target:  5'- cGGCAgcaucccCCCCUCCcCGUCgUCCUCGGcCa -3'
miRNA:   3'- -CCGU-------GGGGAGGuGUAG-AGGAGCUaGc -5'
29494 5' -56.2 NC_006151.1 + 10534 0.67 0.856805
Target:  5'- gGGCGCCUCUCCACGccccgUUCCgccCGG-CGc -3'
miRNA:   3'- -CCGUGGGGAGGUGUa----GAGGa--GCUaGC- -5'
29494 5' -56.2 NC_006151.1 + 12799 0.68 0.797587
Target:  5'- cGGCGCgcccgcuCCCUCCGCGUCcCCUCu---- -3'
miRNA:   3'- -CCGUG-------GGGAGGUGUAGaGGAGcuagc -5'
29494 5' -56.2 NC_006151.1 + 12835 0.66 0.899125
Target:  5'- cGCcCCCCgcggCCACAccgagccuUCUCCgcgCGGUCc -3'
miRNA:   3'- cCGuGGGGa---GGUGU--------AGAGGa--GCUAGc -5'
29494 5' -56.2 NC_006151.1 + 13058 0.68 0.816004
Target:  5'- -cCACCCCgCCGCGccccuuUUUCCUCGAgagCGg -3'
miRNA:   3'- ccGUGGGGaGGUGU------AGAGGAGCUa--GC- -5'
29494 5' -56.2 NC_006151.1 + 15086 0.67 0.841039
Target:  5'- uGGCGCCCCgacaCGCGgcgCCUCGGggcCGa -3'
miRNA:   3'- -CCGUGGGGag--GUGUagaGGAGCUa--GC- -5'
29494 5' -56.2 NC_006151.1 + 20419 0.67 0.849019
Target:  5'- cGC-CCCCUCCuCGUCcUCCUCcucuucGUCGg -3'
miRNA:   3'- cCGuGGGGAGGuGUAG-AGGAGc-----UAGC- -5'
29494 5' -56.2 NC_006151.1 + 20932 0.69 0.751269
Target:  5'- cGGCgaggGCCCCUCCagaaacaGCAggUCCcgUCGAUCGu -3'
miRNA:   3'- -CCG----UGGGGAGG-------UGUagAGG--AGCUAGC- -5'
29494 5' -56.2 NC_006151.1 + 23128 0.73 0.561992
Target:  5'- cGCGCCCCUCCucCGUCgccgggcCCUCGG-CGg -3'
miRNA:   3'- cCGUGGGGAGGu-GUAGa------GGAGCUaGC- -5'
29494 5' -56.2 NC_006151.1 + 23221 0.67 0.841039
Target:  5'- cGGC-CUCCUCCucgguCAcCUCCUCGcccUCGg -3'
miRNA:   3'- -CCGuGGGGAGGu----GUaGAGGAGCu--AGC- -5'
29494 5' -56.2 NC_006151.1 + 27215 0.66 0.88589
Target:  5'- cGGgGCCCCgcgcgCCguggacgcGCAcCUCCUCGGggUCGg -3'
miRNA:   3'- -CCgUGGGGa----GG--------UGUaGAGGAGCU--AGC- -5'
29494 5' -56.2 NC_006151.1 + 28017 0.66 0.904785
Target:  5'- gGGgAUCCC-CCGCAUCcgguaccgucgggUCCcgCGAUCGu -3'
miRNA:   3'- -CCgUGGGGaGGUGUAG-------------AGGa-GCUAGC- -5'
29494 5' -56.2 NC_006151.1 + 28134 0.7 0.713292
Target:  5'- gGGCGCg-CUCCGCGccUCUCC-CGGUCGa -3'
miRNA:   3'- -CCGUGggGAGGUGU--AGAGGaGCUAGC- -5'
29494 5' -56.2 NC_006151.1 + 32391 0.66 0.89262
Target:  5'- aGCGCCCCggcuUCUGCuucuuauUCUCCUCucUCGg -3'
miRNA:   3'- cCGUGGGG----AGGUGu------AGAGGAGcuAGC- -5'
29494 5' -56.2 NC_006151.1 + 36038 0.66 0.89262
Target:  5'- cGGCGCCgcggcuCCUCCgGCGaggaUCUCCUCu-UCGg -3'
miRNA:   3'- -CCGUGG------GGAGG-UGU----AGAGGAGcuAGC- -5'
29494 5' -56.2 NC_006151.1 + 36250 0.66 0.88589
Target:  5'- cGGguCCCCggccgCCGgGUC-CCcCGGUCGg -3'
miRNA:   3'- -CCguGGGGa----GGUgUAGaGGaGCUAGC- -5'
29494 5' -56.2 NC_006151.1 + 36407 0.66 0.91726
Target:  5'- gGGCGcucgucCCCCUCCGCAgcCUCCcCGGc-- -3'
miRNA:   3'- -CCGU------GGGGAGGUGUa-GAGGaGCUagc -5'
29494 5' -56.2 NC_006151.1 + 36649 0.67 0.855264
Target:  5'- cGGCGCcCCCUCCGCcggaggggaCCgCGGUCGu -3'
miRNA:   3'- -CCGUG-GGGAGGUGuaga-----GGaGCUAGC- -5'
29494 5' -56.2 NC_006151.1 + 36754 0.66 0.911448
Target:  5'- uGGCGCCCggagCCcCGUCUCCUCc---- -3'
miRNA:   3'- -CCGUGGGga--GGuGUAGAGGAGcuagc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.