miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29494 5' -56.2 NC_006151.1 + 142769 0.66 0.905402
Target:  5'- gGGC-CCCC-CCACAaCUCUcUGGUCu -3'
miRNA:   3'- -CCGuGGGGaGGUGUaGAGGaGCUAGc -5'
29494 5' -56.2 NC_006151.1 + 141912 0.7 0.697381
Target:  5'- cGCGCCCCgcggccguuccccucUCCACGUCcaUCC-CGGUCu -3'
miRNA:   3'- cCGUGGGG---------------AGGUGUAG--AGGaGCUAGc -5'
29494 5' -56.2 NC_006151.1 + 141567 0.7 0.713292
Target:  5'- cGGCGCgaUCCUCCGCcgCUCCUCccccCGg -3'
miRNA:   3'- -CCGUG--GGGAGGUGuaGAGGAGcua-GC- -5'
29494 5' -56.2 NC_006151.1 + 141383 0.66 0.911448
Target:  5'- gGGCggGCCCCgggcaaacagCgGCGUgUCCggCGAUCGg -3'
miRNA:   3'- -CCG--UGGGGa---------GgUGUAgAGGa-GCUAGC- -5'
29494 5' -56.2 NC_006151.1 + 138503 0.71 0.653023
Target:  5'- gGGCGCCCg-CUGCAcCUCCUCGuccUCGg -3'
miRNA:   3'- -CCGUGGGgaGGUGUaGAGGAGCu--AGC- -5'
29494 5' -56.2 NC_006151.1 + 137436 0.67 0.878939
Target:  5'- gGGguCCgCCUCCGCGgcCUCCUcCGA-CGa -3'
miRNA:   3'- -CCguGG-GGAGGUGUa-GAGGA-GCUaGC- -5'
29494 5' -56.2 NC_006151.1 + 135054 0.72 0.622551
Target:  5'- cGGUcCCCCUCCuCGUCuucccccgccUCCUCGggCGg -3'
miRNA:   3'- -CCGuGGGGAGGuGUAG----------AGGAGCuaGC- -5'
29494 5' -56.2 NC_006151.1 + 132872 0.67 0.878939
Target:  5'- cGCGCCCC-CCAgCAgggCCUCG-UCGa -3'
miRNA:   3'- cCGUGGGGaGGU-GUagaGGAGCuAGC- -5'
29494 5' -56.2 NC_006151.1 + 131415 0.69 0.752225
Target:  5'- gGGCuCCuCCUCCuCGcugcUCUCCUCG-UCGg -3'
miRNA:   3'- -CCGuGG-GGAGGuGU----AGAGGAGCuAGC- -5'
29494 5' -56.2 NC_006151.1 + 129268 0.72 0.590123
Target:  5'- aGGCAUCCUUCCACGaagcgcggcgcgUUCCUCGggCGc -3'
miRNA:   3'- -CCGUGGGGAGGUGUa-----------GAGGAGCuaGC- -5'
29494 5' -56.2 NC_006151.1 + 128776 0.75 0.429232
Target:  5'- cGUACCgCUCCACGg--CCUCGGUCGc -3'
miRNA:   3'- cCGUGGgGAGGUGUagaGGAGCUAGC- -5'
29494 5' -56.2 NC_006151.1 + 116075 0.71 0.632711
Target:  5'- uGGCGCCCUgguagCCGCcgccGUCgUCCUCG-UCGg -3'
miRNA:   3'- -CCGUGGGGa----GGUG----UAG-AGGAGCuAGC- -5'
29494 5' -56.2 NC_006151.1 + 113811 0.66 0.89262
Target:  5'- cGGCGCCacggCCUCgCGCucGUCUCcCUCGAgcacacgcUCGg -3'
miRNA:   3'- -CCGUGG----GGAG-GUG--UAGAG-GAGCU--------AGC- -5'
29494 5' -56.2 NC_006151.1 + 108276 0.68 0.798479
Target:  5'- aGGCccGCCCCUCCACcaccGUCUgCCcCGG-CGg -3'
miRNA:   3'- -CCG--UGGGGAGGUG----UAGA-GGaGCUaGC- -5'
29494 5' -56.2 NC_006151.1 + 87537 0.69 0.76172
Target:  5'- cGGCcCCCCagCCGCccGUCcaggCCUCGGUCu -3'
miRNA:   3'- -CCGuGGGGa-GGUG--UAGa---GGAGCUAGc -5'
29494 5' -56.2 NC_006151.1 + 84924 0.72 0.612398
Target:  5'- cGGCGCCgCCUCCGgCGUgCUCUUCGGc-- -3'
miRNA:   3'- -CCGUGG-GGAGGU-GUA-GAGGAGCUagc -5'
29494 5' -56.2 NC_006151.1 + 83338 0.66 0.88589
Target:  5'- aGGCGCgCgUCCACGUgCUCCccggCGcgCGc -3'
miRNA:   3'- -CCGUGgGgAGGUGUA-GAGGa---GCuaGC- -5'
29494 5' -56.2 NC_006151.1 + 80527 0.68 0.832872
Target:  5'- uGGCGCUCC-CCGCAUCcCCUCc---- -3'
miRNA:   3'- -CCGUGGGGaGGUGUAGaGGAGcuagc -5'
29494 5' -56.2 NC_006151.1 + 75251 0.69 0.771102
Target:  5'- aGGCGCacugcaCCUCCGCGggCUCCUgGcgCa -3'
miRNA:   3'- -CCGUGg-----GGAGGUGUa-GAGGAgCuaGc -5'
29494 5' -56.2 NC_006151.1 + 72039 0.67 0.856805
Target:  5'- gGGCGCCCCgCCGCGcagCgUCUCGG-CGg -3'
miRNA:   3'- -CCGUGGGGaGGUGUa--GaGGAGCUaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.