miRNA display CGI


Results 21 - 40 of 57 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29494 5' -56.2 NC_006151.1 + 37202 0.66 0.911448
Target:  5'- cGGC-CUCCUCCGCcucCUCCUCcgccgCGg -3'
miRNA:   3'- -CCGuGGGGAGGUGua-GAGGAGcua--GC- -5'
29494 5' -56.2 NC_006151.1 + 37659 0.7 0.683345
Target:  5'- cGCGCCCCacggCCACggCUCCUUcAUCa -3'
miRNA:   3'- cCGUGGGGa---GGUGuaGAGGAGcUAGc -5'
29494 5' -56.2 NC_006151.1 + 39010 0.7 0.703366
Target:  5'- cGGCGCCCCgcuccgCCGCcgCgccgCCUgGAUgCGg -3'
miRNA:   3'- -CCGUGGGGa-----GGUGuaGa---GGAgCUA-GC- -5'
29494 5' -56.2 NC_006151.1 + 39814 0.68 0.816004
Target:  5'- cGGCGCCCCgcugcggCCcgucuuCGUCUCCUgCGGcCGc -3'
miRNA:   3'- -CCGUGGGGa------GGu-----GUAGAGGA-GCUaGC- -5'
29494 5' -56.2 NC_006151.1 + 40297 0.76 0.403203
Target:  5'- --gGCCCCUCCACcggCUCCUCGAg-- -3'
miRNA:   3'- ccgUGGGGAGGUGua-GAGGAGCUagc -5'
29494 5' -56.2 NC_006151.1 + 40480 0.66 0.911448
Target:  5'- uGGCcCUCCUCCuCuccuUCUCCUcCGcgCGg -3'
miRNA:   3'- -CCGuGGGGAGGuGu---AGAGGA-GCuaGC- -5'
29494 5' -56.2 NC_006151.1 + 43020 1.1 0.002565
Target:  5'- uGGCACCCCUCCACAUCUCCUCGAUCGc -3'
miRNA:   3'- -CCGUGGGGAGGUGUAGAGGAGCUAGC- -5'
29494 5' -56.2 NC_006151.1 + 46766 0.67 0.849019
Target:  5'- cGGCucGCUCCUCCcccuCGUCuucacccuccUCCUCGAUgCGg -3'
miRNA:   3'- -CCG--UGGGGAGGu---GUAG----------AGGAGCUA-GC- -5'
29494 5' -56.2 NC_006151.1 + 50353 0.7 0.732931
Target:  5'- cGGCcUCCCgCCGCGUCUCCgccggCGGgggCGa -3'
miRNA:   3'- -CCGuGGGGaGGUGUAGAGGa----GCUa--GC- -5'
29494 5' -56.2 NC_006151.1 + 50899 0.66 0.89262
Target:  5'- cGCGCCCC-CCGC--CUCCUguugcuaccgCGAUCa -3'
miRNA:   3'- cCGUGGGGaGGUGuaGAGGA----------GCUAGc -5'
29494 5' -56.2 NC_006151.1 + 54181 0.66 0.911448
Target:  5'- gGGCGCCCCcUCGCGgaUCCUC-AUCc -3'
miRNA:   3'- -CCGUGGGGaGGUGUagAGGAGcUAGc -5'
29494 5' -56.2 NC_006151.1 + 59264 0.67 0.878939
Target:  5'- aGGC-CUCCUcCCACAUCaCCUUGAa-- -3'
miRNA:   3'- -CCGuGGGGA-GGUGUAGaGGAGCUagc -5'
29494 5' -56.2 NC_006151.1 + 63734 0.66 0.905402
Target:  5'- aGGCGCCacaCCUCCggcGCGUCggcggggcgUCCUCGG-CGc -3'
miRNA:   3'- -CCGUGG---GGAGG---UGUAG---------AGGAGCUaGC- -5'
29494 5' -56.2 NC_006151.1 + 64020 0.68 0.80732
Target:  5'- aGGCGCCCgaUCGCGUCg---CGAUCGc -3'
miRNA:   3'- -CCGUGGGgaGGUGUAGaggaGCUAGC- -5'
29494 5' -56.2 NC_006151.1 + 64133 0.69 0.780361
Target:  5'- cGCGCCCgUCUcgucgaaggugaACAUCUCCUCcuUCGc -3'
miRNA:   3'- cCGUGGGgAGG------------UGUAGAGGAGcuAGC- -5'
29494 5' -56.2 NC_006151.1 + 65928 0.7 0.713292
Target:  5'- gGGCGCCCCgCCGCcggCccagUCCUCG-UCGa -3'
miRNA:   3'- -CCGUGGGGaGGUGua-G----AGGAGCuAGC- -5'
29494 5' -56.2 NC_006151.1 + 68880 0.72 0.592143
Target:  5'- gGGCGCgCCCggCCACGUCgaggacggCCUCGcgGUCGc -3'
miRNA:   3'- -CCGUG-GGGa-GGUGUAGa-------GGAGC--UAGC- -5'
29494 5' -56.2 NC_006151.1 + 72039 0.67 0.856805
Target:  5'- gGGCGCCCCgCCGCGcagCgUCUCGG-CGg -3'
miRNA:   3'- -CCGUGGGGaGGUGUa--GaGGAGCUaGC- -5'
29494 5' -56.2 NC_006151.1 + 75251 0.69 0.771102
Target:  5'- aGGCGCacugcaCCUCCGCGggCUCCUgGcgCa -3'
miRNA:   3'- -CCGUGg-----GGAGGUGUa-GAGGAgCuaGc -5'
29494 5' -56.2 NC_006151.1 + 80527 0.68 0.832872
Target:  5'- uGGCGCUCC-CCGCAUCcCCUCc---- -3'
miRNA:   3'- -CCGUGGGGaGGUGUAGaGGAGcuagc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.