miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29494 5' -56.2 NC_006151.1 + 7876 0.67 0.871771
Target:  5'- -cCACCCCUCUAUcucucUCUCC-CGGUCc -3'
miRNA:   3'- ccGUGGGGAGGUGu----AGAGGaGCUAGc -5'
29494 5' -56.2 NC_006151.1 + 72039 0.67 0.856805
Target:  5'- gGGCGCCCCgCCGCGcagCgUCUCGG-CGg -3'
miRNA:   3'- -CCGUGGGGaGGUGUa--GaGGAGCUaGC- -5'
29494 5' -56.2 NC_006151.1 + 10534 0.67 0.856805
Target:  5'- gGGCGCCUCUCCACGccccgUUCCgccCGG-CGc -3'
miRNA:   3'- -CCGUGGGGAGGUGUa----GAGGa--GCUaGC- -5'
29494 5' -56.2 NC_006151.1 + 36649 0.67 0.855264
Target:  5'- cGGCGCcCCCUCCGCcggaggggaCCgCGGUCGu -3'
miRNA:   3'- -CCGUG-GGGAGGUGuaga-----GGaGCUAGC- -5'
29494 5' -56.2 NC_006151.1 + 46766 0.67 0.849019
Target:  5'- cGGCucGCUCCUCCcccuCGUCuucacccuccUCCUCGAUgCGg -3'
miRNA:   3'- -CCG--UGGGGAGGu---GUAG----------AGGAGCUA-GC- -5'
29494 5' -56.2 NC_006151.1 + 20419 0.67 0.849019
Target:  5'- cGC-CCCCUCCuCGUCcUCCUCcucuucGUCGg -3'
miRNA:   3'- cCGuGGGGAGGuGUAG-AGGAGc-----UAGC- -5'
29494 5' -56.2 NC_006151.1 + 15086 0.67 0.841039
Target:  5'- uGGCGCCCCgacaCGCGgcgCCUCGGggcCGa -3'
miRNA:   3'- -CCGUGGGGag--GUGUagaGGAGCUa--GC- -5'
29494 5' -56.2 NC_006151.1 + 23221 0.67 0.841039
Target:  5'- cGGC-CUCCUCCucgguCAcCUCCUCGcccUCGg -3'
miRNA:   3'- -CCGuGGGGAGGu----GUaGAGGAGCu--AGC- -5'
29494 5' -56.2 NC_006151.1 + 80527 0.68 0.832872
Target:  5'- uGGCGCUCC-CCGCAUCcCCUCc---- -3'
miRNA:   3'- -CCGUGGGGaGGUGUAGaGGAGcuagc -5'
29494 5' -56.2 NC_006151.1 + 39814 0.68 0.816004
Target:  5'- cGGCGCCCCgcugcggCCcgucuuCGUCUCCUgCGGcCGc -3'
miRNA:   3'- -CCGUGGGGa------GGu-----GUAGAGGA-GCUaGC- -5'
29494 5' -56.2 NC_006151.1 + 13058 0.68 0.816004
Target:  5'- -cCACCCCgCCGCGccccuuUUUCCUCGAgagCGg -3'
miRNA:   3'- ccGUGGGGaGGUGU------AGAGGAGCUa--GC- -5'
29494 5' -56.2 NC_006151.1 + 64020 0.68 0.80732
Target:  5'- aGGCGCCCgaUCGCGUCg---CGAUCGc -3'
miRNA:   3'- -CCGUGGGgaGGUGUAGaggaGCUAGC- -5'
29494 5' -56.2 NC_006151.1 + 108276 0.68 0.798479
Target:  5'- aGGCccGCCCCUCCACcaccGUCUgCCcCGG-CGg -3'
miRNA:   3'- -CCG--UGGGGAGGUG----UAGA-GGaGCUaGC- -5'
29494 5' -56.2 NC_006151.1 + 12799 0.68 0.797587
Target:  5'- cGGCGCgcccgcuCCCUCCGCGUCcCCUCu---- -3'
miRNA:   3'- -CCGUG-------GGGAGGUGUAGaGGAGcuagc -5'
29494 5' -56.2 NC_006151.1 + 64133 0.69 0.780361
Target:  5'- cGCGCCCgUCUcgucgaaggugaACAUCUCCUCcuUCGc -3'
miRNA:   3'- cCGUGGGgAGG------------UGUAGAGGAGcuAGC- -5'
29494 5' -56.2 NC_006151.1 + 75251 0.69 0.771102
Target:  5'- aGGCGCacugcaCCUCCGCGggCUCCUgGcgCa -3'
miRNA:   3'- -CCGUGg-----GGAGGUGUa-GAGGAgCuaGc -5'
29494 5' -56.2 NC_006151.1 + 87537 0.69 0.76172
Target:  5'- cGGCcCCCCagCCGCccGUCcaggCCUCGGUCu -3'
miRNA:   3'- -CCGuGGGGa-GGUG--UAGa---GGAGCUAGc -5'
29494 5' -56.2 NC_006151.1 + 131415 0.69 0.752225
Target:  5'- gGGCuCCuCCUCCuCGcugcUCUCCUCG-UCGg -3'
miRNA:   3'- -CCGuGG-GGAGGuGU----AGAGGAGCuAGC- -5'
29494 5' -56.2 NC_006151.1 + 20932 0.69 0.751269
Target:  5'- cGGCgaggGCCCCUCCagaaacaGCAggUCCcgUCGAUCGu -3'
miRNA:   3'- -CCG----UGGGGAGG-------UGUagAGG--AGCUAGC- -5'
29494 5' -56.2 NC_006151.1 + 50353 0.7 0.732931
Target:  5'- cGGCcUCCCgCCGCGUCUCCgccggCGGgggCGa -3'
miRNA:   3'- -CCGuGGGGaGGUGUAGAGGa----GCUa--GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.