miRNA display CGI


Results 21 - 40 of 389 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29496 5' -63.6 NC_006151.1 + 89137 0.66 0.550397
Target:  5'- gGaCCGGGg--GCGUCgagacCGCGCCCGCc -3'
miRNA:   3'- aC-GGCUCguaCGCGGa----GCGCGGGCGc -5'
29496 5' -63.6 NC_006151.1 + 83237 0.66 0.550397
Target:  5'- aGCgCG-GCGcGCGCCcccagucgUCGCGCCaGCGg -3'
miRNA:   3'- aCG-GCuCGUaCGCGG--------AGCGCGGgCGC- -5'
29496 5' -63.6 NC_006151.1 + 70645 0.66 0.550397
Target:  5'- gGCCGcGCGcgagGCGCCcguccucaCGCGCgCCGCc -3'
miRNA:   3'- aCGGCuCGUa---CGCGGa-------GCGCG-GGCGc -5'
29496 5' -63.6 NC_006151.1 + 58673 0.66 0.550397
Target:  5'- gGCCGc-CAUgaccGCGCCgugCGCGCCgCGCc -3'
miRNA:   3'- aCGGCucGUA----CGCGGa--GCGCGG-GCGc -5'
29496 5' -63.6 NC_006151.1 + 13181 0.66 0.550397
Target:  5'- cGCCGcGGC---CGUCUCgGgGCCCGCGg -3'
miRNA:   3'- aCGGC-UCGuacGCGGAG-CgCGGGCGC- -5'
29496 5' -63.6 NC_006151.1 + 135101 0.66 0.550397
Target:  5'- gGCCGGGCggGCGgCgguaGCGCgCGgGg -3'
miRNA:   3'- aCGGCUCGuaCGCgGag--CGCGgGCgC- -5'
29496 5' -63.6 NC_006151.1 + 4022 0.66 0.550397
Target:  5'- gGCCGcGGCGUagguccagGCgGCCUCGCGggCGCGg -3'
miRNA:   3'- aCGGC-UCGUA--------CG-CGGAGCGCggGCGC- -5'
29496 5' -63.6 NC_006151.1 + 38689 0.66 0.550397
Target:  5'- -cCCGGcGCAaGCGCCgcucccucggacUCGgGCCCGCu -3'
miRNA:   3'- acGGCU-CGUaCGCGG------------AGCgCGGGCGc -5'
29496 5' -63.6 NC_006151.1 + 57073 0.66 0.550397
Target:  5'- -aCCGGGCcgGCGCCgcgcagGCGCaCGCa -3'
miRNA:   3'- acGGCUCGuaCGCGGag----CGCGgGCGc -5'
29496 5' -63.6 NC_006151.1 + 65503 0.66 0.550397
Target:  5'- cGCCG-GCGgagcGCGCCUC-C-UCCGCGg -3'
miRNA:   3'- aCGGCuCGUa---CGCGGAGcGcGGGCGC- -5'
29496 5' -63.6 NC_006151.1 + 94255 0.66 0.550397
Target:  5'- cGCUGAGCGcgGCcacguccuugGCgUCGuCGCCCaGCGg -3'
miRNA:   3'- aCGGCUCGUa-CG----------CGgAGC-GCGGG-CGC- -5'
29496 5' -63.6 NC_006151.1 + 115577 0.66 0.550397
Target:  5'- cGCgCGGGCAgGuCGCgCUCGagcaGCUCGCGc -3'
miRNA:   3'- aCG-GCUCGUaC-GCG-GAGCg---CGGGCGC- -5'
29496 5' -63.6 NC_006151.1 + 117785 0.66 0.550397
Target:  5'- -uCCGGGCGggGCGCCaCGC-CCgGCGg -3'
miRNA:   3'- acGGCUCGUa-CGCGGaGCGcGGgCGC- -5'
29496 5' -63.6 NC_006151.1 + 135863 0.66 0.550397
Target:  5'- -aCCGGGCAcGUgGCCa-GCGUCCGCGu -3'
miRNA:   3'- acGGCUCGUaCG-CGGagCGCGGGCGC- -5'
29496 5' -63.6 NC_006151.1 + 17470 0.66 0.549439
Target:  5'- uUGCCGcGGCGUGU-CCUCgucggcgGCGCgCCGCu -3'
miRNA:   3'- -ACGGC-UCGUACGcGGAG-------CGCG-GGCGc -5'
29496 5' -63.6 NC_006151.1 + 56057 0.66 0.544656
Target:  5'- cGCUGAcGC-UGCGCCUCgagagcggcgagacgGUGuCCUGCGa -3'
miRNA:   3'- aCGGCU-CGuACGCGGAG---------------CGC-GGGCGC- -5'
29496 5' -63.6 NC_006151.1 + 130523 0.66 0.540839
Target:  5'- gGCgCGGGCGUcGCGUacaCGCcCCCGCGc -3'
miRNA:   3'- aCG-GCUCGUA-CGCGga-GCGcGGGCGC- -5'
29496 5' -63.6 NC_006151.1 + 81777 0.66 0.540839
Target:  5'- -aCCGGGac-GCGCUcggCGCGCCCGuCGa -3'
miRNA:   3'- acGGCUCguaCGCGGa--GCGCGGGC-GC- -5'
29496 5' -63.6 NC_006151.1 + 71808 0.66 0.540839
Target:  5'- gGCCGAGCucgcGCGUggCGCuGCCCaGCu -3'
miRNA:   3'- aCGGCUCGua--CGCGgaGCG-CGGG-CGc -5'
29496 5' -63.6 NC_006151.1 + 66007 0.66 0.540839
Target:  5'- -uCCGcGGCGUcgaGCGCCUCcgcaaagucCGCCCGCGu -3'
miRNA:   3'- acGGC-UCGUA---CGCGGAGc--------GCGGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.