miRNA display CGI


Results 21 - 40 of 389 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29496 5' -63.6 NC_006151.1 + 121875 0.76 0.135027
Target:  5'- cGCCGcucacguGCGcgcUGCGCCUgGCGCUCGCGu -3'
miRNA:   3'- aCGGCu------CGU---ACGCGGAgCGCGGGCGC- -5'
29496 5' -63.6 NC_006151.1 + 46138 0.76 0.141874
Target:  5'- -uCCGGGUcUGgGUCUCGCGCCCGCc -3'
miRNA:   3'- acGGCUCGuACgCGGAGCGCGGGCGc -5'
29496 5' -63.6 NC_006151.1 + 101102 0.76 0.141874
Target:  5'- gGcCCGGGUcggGCGUCUCGUGCCUGCGc -3'
miRNA:   3'- aC-GGCUCGua-CGCGGAGCGCGGGCGC- -5'
29496 5' -63.6 NC_006151.1 + 57103 0.76 0.141874
Target:  5'- cGCCgcGAGCAgcgcGCGCCgcCGCGCCCgGCGg -3'
miRNA:   3'- aCGG--CUCGUa---CGCGGa-GCGCGGG-CGC- -5'
29496 5' -63.6 NC_006151.1 + 100720 0.76 0.141874
Target:  5'- cGCgagGAGCAgGCGCCgccCGCGCCCGCc -3'
miRNA:   3'- aCGg--CUCGUaCGCGGa--GCGCGGGCGc -5'
29496 5' -63.6 NC_006151.1 + 84253 0.75 0.145415
Target:  5'- aGCgGAGCAUGCGCgUgcucgacgugaCGCGCCUGCc -3'
miRNA:   3'- aCGgCUCGUACGCGgA-----------GCGCGGGCGc -5'
29496 5' -63.6 NC_006151.1 + 90135 0.75 0.15274
Target:  5'- gGCgGGGCgguaGUGCGCgUCGgGCCCGCu -3'
miRNA:   3'- aCGgCUCG----UACGCGgAGCgCGGGCGc -5'
29496 5' -63.6 NC_006151.1 + 48584 0.75 0.15274
Target:  5'- cUGCCGcccGGgGUGCGCCUCGUcguGCCUGCc -3'
miRNA:   3'- -ACGGC---UCgUACGCGGAGCG---CGGGCGc -5'
29496 5' -63.6 NC_006151.1 + 69311 0.75 0.15274
Target:  5'- cGCCGGcgccacacgugcGCggGCGCgUCGcCGCCCGCGa -3'
miRNA:   3'- aCGGCU------------CGuaCGCGgAGC-GCGGGCGC- -5'
29496 5' -63.6 NC_006151.1 + 68081 0.75 0.160399
Target:  5'- cGgCGGGCA-GCGCCUCGagGCUCGCGu -3'
miRNA:   3'- aCgGCUCGUaCGCGGAGCg-CGGGCGC- -5'
29496 5' -63.6 NC_006151.1 + 115122 0.75 0.160399
Target:  5'- cGCCGGcgacgcgcGCGUGCGCCUcggccagcaCGCGCCCGa- -3'
miRNA:   3'- aCGGCU--------CGUACGCGGA---------GCGCGGGCgc -5'
29496 5' -63.6 NC_006151.1 + 78695 0.74 0.17676
Target:  5'- cGCCG-GCcgGgGCCUCgucgccgcgacgGCGCCCGUGg -3'
miRNA:   3'- aCGGCuCGuaCgCGGAG------------CGCGGGCGC- -5'
29496 5' -63.6 NC_006151.1 + 38551 0.74 0.184597
Target:  5'- cGcCCGAGCGgcgcaagaagaaGCGCCgCGCGCCCGgGg -3'
miRNA:   3'- aC-GGCUCGUa-----------CGCGGaGCGCGGGCgC- -5'
29496 5' -63.6 NC_006151.1 + 67857 0.74 0.188177
Target:  5'- cGgCGAGCcgGCGCCgagguggcgcgcgCGCcaGCCCGCGg -3'
miRNA:   3'- aCgGCUCGuaCGCGGa------------GCG--CGGGCGC- -5'
29496 5' -63.6 NC_006151.1 + 39892 0.74 0.19459
Target:  5'- gGCCGAGUugcGCGCCUucUGCGC-CGCGg -3'
miRNA:   3'- aCGGCUCGua-CGCGGA--GCGCGgGCGC- -5'
29496 5' -63.6 NC_006151.1 + 120882 0.73 0.199286
Target:  5'- cGCUccGuCAUG-GCCUCGCGCCCGCu -3'
miRNA:   3'- aCGGcuC-GUACgCGGAGCGCGGGCGc -5'
29496 5' -63.6 NC_006151.1 + 138972 0.73 0.199286
Target:  5'- gGCCGAGCucgcgacGCGCCgcgcCGCGCucagCCGCGa -3'
miRNA:   3'- aCGGCUCGua-----CGCGGa---GCGCG----GGCGC- -5'
29496 5' -63.6 NC_006151.1 + 99598 0.73 0.201192
Target:  5'- gGCCGAGCGccGCGCCgggcuggcgcacaGCGCCgCGCGc -3'
miRNA:   3'- aCGGCUCGUa-CGCGGag-----------CGCGG-GCGC- -5'
29496 5' -63.6 NC_006151.1 + 136829 0.73 0.203597
Target:  5'- cGCgCGGGCucUGCgacgcggccgccgGCCUCGCGCgCCGCGu -3'
miRNA:   3'- aCG-GCUCGu-ACG-------------CGGAGCGCG-GGCGC- -5'
29496 5' -63.6 NC_006151.1 + 85631 0.73 0.204081
Target:  5'- cGCCGcGCG-GCGCCagcggggaCGCGCCCGCc -3'
miRNA:   3'- aCGGCuCGUaCGCGGa-------GCGCGGGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.