miRNA display CGI


Results 1 - 20 of 389 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29496 5' -63.6 NC_006151.1 + 35093 1.07 0.000738
Target:  5'- gUGCCGAGCAUGCGCCUCGCGCCCGCGc -3'
miRNA:   3'- -ACGGCUCGUACGCGGAGCGCGGGCGC- -5'
29496 5' -63.6 NC_006151.1 + 77959 0.84 0.0356
Target:  5'- cGCUGAGCGUGCGCC-CGCGCCgGUa -3'
miRNA:   3'- aCGGCUCGUACGCGGaGCGCGGgCGc -5'
29496 5' -63.6 NC_006151.1 + 136069 0.84 0.036545
Target:  5'- cGCCGAGUAcGCGCCggaGCGCCCGCu -3'
miRNA:   3'- aCGGCUCGUaCGCGGag-CGCGGGCGc -5'
29496 5' -63.6 NC_006151.1 + 86850 0.83 0.045866
Target:  5'- cGCCGAGCGcaGCGCCcggcgacuacaucuUCGUGCCCGCGg -3'
miRNA:   3'- aCGGCUCGUa-CGCGG--------------AGCGCGGGCGC- -5'
29496 5' -63.6 NC_006151.1 + 20780 0.82 0.052642
Target:  5'- cGCCGGGCGaGCGgCUCGCGCuuGCGc -3'
miRNA:   3'- aCGGCUCGUaCGCgGAGCGCGggCGC- -5'
29496 5' -63.6 NC_006151.1 + 82297 0.81 0.059921
Target:  5'- cGCgGGGCAgcGCGCCUcCGCGUCCGCGa -3'
miRNA:   3'- aCGgCUCGUa-CGCGGA-GCGCGGGCGC- -5'
29496 5' -63.6 NC_006151.1 + 136745 0.8 0.066438
Target:  5'- cGCCGAGCGUcgcGCGCCUCGC-CCCGg- -3'
miRNA:   3'- aCGGCUCGUA---CGCGGAGCGcGGGCgc -5'
29496 5' -63.6 NC_006151.1 + 106692 0.8 0.073634
Target:  5'- cGCCGGGCGccgGCGaCCUguaCGCGCCCGUGg -3'
miRNA:   3'- aCGGCUCGUa--CGC-GGA---GCGCGGGCGC- -5'
29496 5' -63.6 NC_006151.1 + 39115 0.77 0.105153
Target:  5'- cGCCGAGCccgccgaggGCGCCcCGCGCCCGg- -3'
miRNA:   3'- aCGGCUCGua-------CGCGGaGCGCGGGCgc -5'
29496 5' -63.6 NC_006151.1 + 73102 0.77 0.110583
Target:  5'- cGCCGuGCAccuCGCCggcggCGCGCCCGCGc -3'
miRNA:   3'- aCGGCuCGUac-GCGGa----GCGCGGGCGC- -5'
29496 5' -63.6 NC_006151.1 + 120354 0.77 0.116275
Target:  5'- gGCCGGGCucgcggGCGCCUaccaGCGCCCGg- -3'
miRNA:   3'- aCGGCUCGua----CGCGGAg---CGCGGGCgc -5'
29496 5' -63.6 NC_006151.1 + 103552 0.77 0.119222
Target:  5'- cGCCGGGCAgccgcucgggGCGCUggucaaCGCGCUCGCGg -3'
miRNA:   3'- aCGGCUCGUa---------CGCGGa-----GCGCGGGCGC- -5'
29496 5' -63.6 NC_006151.1 + 133163 0.77 0.119222
Target:  5'- gGCgCGGGCGUGgGCCUCG-GCCaCGCGu -3'
miRNA:   3'- aCG-GCUCGUACgCGGAGCgCGG-GCGC- -5'
29496 5' -63.6 NC_006151.1 + 104112 0.77 0.121024
Target:  5'- gGCCGAGUucGUGCGCCUgCGCGacguggcggccgaCCGCGg -3'
miRNA:   3'- aCGGCUCG--UACGCGGA-GCGCg------------GGCGC- -5'
29496 5' -63.6 NC_006151.1 + 138702 0.77 0.122239
Target:  5'- cGCUGAGCccgGCGCUgCGCGCCgCGCGc -3'
miRNA:   3'- aCGGCUCGua-CGCGGaGCGCGG-GCGC- -5'
29496 5' -63.6 NC_006151.1 + 136878 0.76 0.125327
Target:  5'- cGUCGAGgA-GCGCCUCGCGCCCcaCGg -3'
miRNA:   3'- aCGGCUCgUaCGCGGAGCGCGGGc-GC- -5'
29496 5' -63.6 NC_006151.1 + 104784 0.76 0.128486
Target:  5'- cGCgGAGcCAUGCGCgcgCUCGUGCgCCGCGa -3'
miRNA:   3'- aCGgCUC-GUACGCG---GAGCGCG-GGCGC- -5'
29496 5' -63.6 NC_006151.1 + 18516 0.76 0.128486
Target:  5'- gGCgaGAGCAUGCGCgUCccCGCCCGCGu -3'
miRNA:   3'- aCGg-CUCGUACGCGgAGc-GCGGGCGC- -5'
29496 5' -63.6 NC_006151.1 + 120316 0.76 0.131719
Target:  5'- gGCuCGGGCAgccucucgGaCGCCgcgCGCGCCCGCGu -3'
miRNA:   3'- aCG-GCUCGUa-------C-GCGGa--GCGCGGGCGC- -5'
29496 5' -63.6 NC_006151.1 + 118328 0.76 0.132047
Target:  5'- -cCCGAGCA-GCGCCgcgcccgcccucucgCGCGCCUGCGa -3'
miRNA:   3'- acGGCUCGUaCGCGGa--------------GCGCGGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.