miRNA display CGI


Results 1 - 20 of 389 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29496 5' -63.6 NC_006151.1 + 696 0.68 0.431751
Target:  5'- cGCCGAGCcUGCcCCUUccgucgcaccggGgGUCCGCGg -3'
miRNA:   3'- aCGGCUCGuACGcGGAG------------CgCGGGCGC- -5'
29496 5' -63.6 NC_006151.1 + 2281 0.69 0.358916
Target:  5'- gGCCG-GCGggGCGCC-CGCGgCgGCGa -3'
miRNA:   3'- aCGGCuCGUa-CGCGGaGCGCgGgCGC- -5'
29496 5' -63.6 NC_006151.1 + 2386 0.69 0.358916
Target:  5'- gGCCG-GCAgGC-CCUCGgGgCCGCGg -3'
miRNA:   3'- aCGGCuCGUaCGcGGAGCgCgGGCGC- -5'
29496 5' -63.6 NC_006151.1 + 2482 0.7 0.336623
Target:  5'- gGCCGcGCG-GUGCCcgaaggCgGCGCCCGCGu -3'
miRNA:   3'- aCGGCuCGUaCGCGGa-----G-CGCGGGCGC- -5'
29496 5' -63.6 NC_006151.1 + 2906 0.69 0.351372
Target:  5'- aGCacgauGAGCcgGCGCCgcgcCGCGCcgagCCGCGa -3'
miRNA:   3'- aCGg----CUCGuaCGCGGa---GCGCG----GGCGC- -5'
29496 5' -63.6 NC_006151.1 + 3132 0.68 0.423236
Target:  5'- gGCCGGGCGcgggGCGCCcucggCGgGCUCgGCGc -3'
miRNA:   3'- aCGGCUCGUa---CGCGGa----GCgCGGG-CGC- -5'
29496 5' -63.6 NC_006151.1 + 3254 0.68 0.414823
Target:  5'- gGCgGAGCGggGCGCCgcgGCGCgCgGCGa -3'
miRNA:   3'- aCGgCUCGUa-CGCGGag-CGCG-GgCGC- -5'
29496 5' -63.6 NC_006151.1 + 3406 0.67 0.503217
Target:  5'- gGCCGcGGCGUGUggGUCUCGCcgGCCgggaCGCGg -3'
miRNA:   3'- aCGGC-UCGUACG--CGGAGCG--CGG----GCGC- -5'
29496 5' -63.6 NC_006151.1 + 3941 0.67 0.457881
Target:  5'- gGCCGGGCGcGgGCUccgCGgGCCCGgGc -3'
miRNA:   3'- aCGGCUCGUaCgCGGa--GCgCGGGCgC- -5'
29496 5' -63.6 NC_006151.1 + 4022 0.66 0.550397
Target:  5'- gGCCGcGGCGUagguccagGCgGCCUCGCGggCGCGg -3'
miRNA:   3'- aCGGC-UCGUA--------CG-CGGAGCGCggGCGC- -5'
29496 5' -63.6 NC_006151.1 + 4139 0.66 0.540839
Target:  5'- gGCCGGGCcgGCcCCggggaUCGCG-UCGCGg -3'
miRNA:   3'- aCGGCUCGuaCGcGG-----AGCGCgGGCGC- -5'
29496 5' -63.6 NC_006151.1 + 5337 0.69 0.398309
Target:  5'- gGCCGcGGCGgaggGCGcCCUCuccggcgcgGCGCCgGCGg -3'
miRNA:   3'- aCGGC-UCGUa---CGC-GGAG---------CGCGGgCGC- -5'
29496 5' -63.6 NC_006151.1 + 5531 0.72 0.246133
Target:  5'- gGCCGAGgAUcgaGcCGCCUCGCGgCgGCGg -3'
miRNA:   3'- aCGGCUCgUA---C-GCGGAGCGCgGgCGC- -5'
29496 5' -63.6 NC_006151.1 + 7641 0.68 0.414823
Target:  5'- cGCCccaCccGCGCCUCGCGCUCgGCGc -3'
miRNA:   3'- aCGGcucGuaCGCGGAGCGCGGG-CGC- -5'
29496 5' -63.6 NC_006151.1 + 8321 0.68 0.431751
Target:  5'- aGCCcccgGGGCGcGCggGCCucgaUCGCGCCCGCc -3'
miRNA:   3'- aCGG----CUCGUaCG--CGG----AGCGCGGGCGc -5'
29496 5' -63.6 NC_006151.1 + 10625 0.71 0.27591
Target:  5'- cGCCc-GCGUGCG-CUCGUGCCgGCGc -3'
miRNA:   3'- aCGGcuCGUACGCgGAGCGCGGgCGC- -5'
29496 5' -63.6 NC_006151.1 + 10677 0.7 0.318133
Target:  5'- cGCgGAGCGcGcCGCCcccccgugaucacguUCGCGCaCCGCGg -3'
miRNA:   3'- aCGgCUCGUaC-GCGG---------------AGCGCG-GGCGC- -5'
29496 5' -63.6 NC_006151.1 + 10935 0.71 0.301752
Target:  5'- cGCCGAGgGUGgGCgCgCGUGUCCGUGu -3'
miRNA:   3'- aCGGCUCgUACgCG-GaGCGCGGGCGC- -5'
29496 5' -63.6 NC_006151.1 + 11032 0.68 0.431751
Target:  5'- cGCCGGGCcgGCcgGCCggGgGCCCGg- -3'
miRNA:   3'- aCGGCUCGuaCG--CGGagCgCGGGCgc -5'
29496 5' -63.6 NC_006151.1 + 11350 0.68 0.431751
Target:  5'- gGCCGcccGCggGCGCUaccgCGCGCuCCGCu -3'
miRNA:   3'- aCGGCu--CGuaCGCGGa---GCGCG-GGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.