Results 1 - 20 of 389 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29496 | 5' | -63.6 | NC_006151.1 | + | 142297 | 0.71 | 0.279041 |
Target: 5'- gGCCGggacgagAGCGaGCGCCguaugggggcccgCGCGCUCGCGg -3' miRNA: 3'- aCGGC-------UCGUaCGCGGa------------GCGCGGGCGC- -5' |
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29496 | 5' | -63.6 | NC_006151.1 | + | 141887 | 0.7 | 0.343941 |
Target: 5'- gGCCGGGCAUcgaGCuccaCCUccaCGCGCcCCGCGg -3' miRNA: 3'- aCGGCUCGUA---CGc---GGA---GCGCG-GGCGC- -5' |
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29496 | 5' | -63.6 | NC_006151.1 | + | 140286 | 0.73 | 0.204081 |
Target: 5'- cGaCGAGCucGUGCGCCggCGcCGCCUGCGg -3' miRNA: 3'- aCgGCUCG--UACGCGGa-GC-GCGGGCGC- -5' |
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29496 | 5' | -63.6 | NC_006151.1 | + | 139444 | 0.66 | 0.569661 |
Target: 5'- cGaCGGGUuaaagGCGCCcCGcCGCCCGCc -3' miRNA: 3'- aCgGCUCGua---CGCGGaGC-GCGGGCGc -5' |
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29496 | 5' | -63.6 | NC_006151.1 | + | 139134 | 0.67 | 0.493068 |
Target: 5'- cGCCc--CGUGCGcCCUCGUcuucccgcuguacGCCCGCGc -3' miRNA: 3'- aCGGcucGUACGC-GGAGCG-------------CGGGCGC- -5' |
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29496 | 5' | -63.6 | NC_006151.1 | + | 138972 | 0.73 | 0.199286 |
Target: 5'- gGCCGAGCucgcgacGCGCCgcgcCGCGCucagCCGCGa -3' miRNA: 3'- aCGGCUCGua-----CGCGGa---GCGCG----GGCGC- -5' |
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29496 | 5' | -63.6 | NC_006151.1 | + | 138702 | 0.77 | 0.122239 |
Target: 5'- cGCUGAGCccgGCGCUgCGCGCCgCGCGc -3' miRNA: 3'- aCGGCUCGua-CGCGGaGCGCGG-GCGC- -5' |
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29496 | 5' | -63.6 | NC_006151.1 | + | 138479 | 0.67 | 0.503217 |
Target: 5'- gGUgGGGCAaucaUGCuCCUCggcggGCGCCCGCu -3' miRNA: 3'- aCGgCUCGU----ACGcGGAG-----CGCGGGCGc -5' |
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29496 | 5' | -63.6 | NC_006151.1 | + | 137731 | 0.68 | 0.440365 |
Target: 5'- cGCCGuacgcgguGGCcgGCGCCgacaCG-GUCCGCGg -3' miRNA: 3'- aCGGC--------UCGuaCGCGGa---GCgCGGGCGC- -5' |
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29496 | 5' | -63.6 | NC_006151.1 | + | 137614 | 0.68 | 0.423236 |
Target: 5'- gGCgCGGGCGgggaccccgGCGCCUCcgcccuCGUCCGCGc -3' miRNA: 3'- aCG-GCUCGUa--------CGCGGAGc-----GCGGGCGC- -5' |
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29496 | 5' | -63.6 | NC_006151.1 | + | 137408 | 0.7 | 0.315357 |
Target: 5'- cGCCGGGgG-GCGcCCUCGCcGCcgCCGCGg -3' miRNA: 3'- aCGGCUCgUaCGC-GGAGCG-CG--GGCGC- -5' |
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29496 | 5' | -63.6 | NC_006151.1 | + | 137314 | 0.69 | 0.390211 |
Target: 5'- cGCCGcGCG-GUGCUcgaCGCGCUCGCGc -3' miRNA: 3'- aCGGCuCGUaCGCGGa--GCGCGGGCGC- -5' |
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29496 | 5' | -63.6 | NC_006151.1 | + | 137260 | 0.67 | 0.475764 |
Target: 5'- cGCCucGC--GCGCC-CgGUGCCCGCGg -3' miRNA: 3'- aCGGcuCGuaCGCGGaG-CGCGGGCGC- -5' |
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29496 | 5' | -63.6 | NC_006151.1 | + | 136988 | 0.71 | 0.269732 |
Target: 5'- cGCCGGGCGgcggGCGCg-CGCGCaCgGCGc -3' miRNA: 3'- aCGGCUCGUa---CGCGgaGCGCG-GgCGC- -5' |
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29496 | 5' | -63.6 | NC_006151.1 | + | 136937 | 0.73 | 0.21907 |
Target: 5'- aGCCGGGCGccgacgGCGCCguccugCGcCGCCUGCu -3' miRNA: 3'- aCGGCUCGUa-----CGCGGa-----GC-GCGGGCGc -5' |
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29496 | 5' | -63.6 | NC_006151.1 | + | 136878 | 0.76 | 0.125327 |
Target: 5'- cGUCGAGgA-GCGCCUCGCGCCCcaCGg -3' miRNA: 3'- aCGGCUCgUaCGCGGAGCGCGGGc-GC- -5' |
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29496 | 5' | -63.6 | NC_006151.1 | + | 136829 | 0.73 | 0.203597 |
Target: 5'- cGCgCGGGCucUGCgacgcggccgccgGCCUCGCGCgCCGCGu -3' miRNA: 3'- aCG-GCUCGu-ACG-------------CGGAGCGCG-GGCGC- -5' |
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29496 | 5' | -63.6 | NC_006151.1 | + | 136745 | 0.8 | 0.066438 |
Target: 5'- cGCCGAGCGUcgcGCGCCUCGC-CCCGg- -3' miRNA: 3'- aCGGCUCGUA---CGCGGAGCGcGGGCgc -5' |
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29496 | 5' | -63.6 | NC_006151.1 | + | 136069 | 0.84 | 0.036545 |
Target: 5'- cGCCGAGUAcGCGCCggaGCGCCCGCu -3' miRNA: 3'- aCGGCUCGUaCGCGGag-CGCGGGCGc -5' |
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29496 | 5' | -63.6 | NC_006151.1 | + | 136040 | 0.69 | 0.374342 |
Target: 5'- -cUCGAGCAggUGCGCC-CGCGCaCCgGCa -3' miRNA: 3'- acGGCUCGU--ACGCGGaGCGCG-GG-CGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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