miRNA display CGI


Results 41 - 60 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29497 3' -65.2 NC_006151.1 + 64180 0.73 0.208303
Target:  5'- cGCCCCCgUCgCCGCCCGCgaucgccCCGggcAGGU-CCg -3'
miRNA:   3'- -CGGGGG-AG-GGCGGGCG-------GGC---UCCAuGG- -5'
29497 3' -65.2 NC_006151.1 + 33875 0.73 0.208784
Target:  5'- cCCCCCaUCCCGgaCCCcCCCGGGGgcggggGCCu -3'
miRNA:   3'- cGGGGG-AGGGC--GGGcGGGCUCCa-----UGG- -5'
29497 3' -65.2 NC_006151.1 + 15000 0.73 0.213643
Target:  5'- aGCaCCCCgaguacgggccCCCGCCCGaCCCcgagGAGGUGCg -3'
miRNA:   3'- -CG-GGGGa----------GGGCGGGC-GGG----CUCCAUGg -5'
29497 3' -65.2 NC_006151.1 + 34075 0.72 0.218598
Target:  5'- cGCCCCCggggUCCCG---GCCCGAGGU-CCa -3'
miRNA:   3'- -CGGGGG----AGGGCgggCGGGCUCCAuGG- -5'
29497 3' -65.2 NC_006151.1 + 108171 0.72 0.218598
Target:  5'- cCCCCCgcCCCGCCCGCCCcccc-ACCa -3'
miRNA:   3'- cGGGGGa-GGGCGGGCGGGcuccaUGG- -5'
29497 3' -65.2 NC_006151.1 + 12983 0.72 0.223652
Target:  5'- cCCaCCCUCCCGacucaCCCGuCCCGGGGgauuCCc -3'
miRNA:   3'- cGG-GGGAGGGC-----GGGC-GGGCUCCau--GG- -5'
29497 3' -65.2 NC_006151.1 + 118324 0.72 0.232471
Target:  5'- uGCCCCCgagcagcgCCgCGCCCGCCCucucgcgcgccugcGAGGcgGCg -3'
miRNA:   3'- -CGGGGGa-------GG-GCGGGCGGG--------------CUCCa-UGg -5'
29497 3' -65.2 NC_006151.1 + 137267 0.72 0.234057
Target:  5'- cGCgCCCggugCCCGCgggcaCGCUCGAGGcgGCCa -3'
miRNA:   3'- -CGgGGGa---GGGCGg----GCGGGCUCCa-UGG- -5'
29497 3' -65.2 NC_006151.1 + 63339 0.72 0.234057
Target:  5'- gGCCUCCUCggCGCgCGCCCGcAGGU-CCu -3'
miRNA:   3'- -CGGGGGAGg-GCGgGCGGGC-UCCAuGG- -5'
29497 3' -65.2 NC_006151.1 + 78948 0.72 0.239411
Target:  5'- cGCgCgCgCCCGCCCGCCuCGGucucGGUGCCc -3'
miRNA:   3'- -CGgGgGaGGGCGGGCGG-GCU----CCAUGG- -5'
29497 3' -65.2 NC_006151.1 + 87300 0.72 0.239411
Target:  5'- cGCCCCC-CUCGCCCGUggcgcaCGccGUGCCg -3'
miRNA:   3'- -CGGGGGaGGGCGGGCGg-----GCucCAUGG- -5'
29497 3' -65.2 NC_006151.1 + 2160 0.72 0.243219
Target:  5'- aGUCCCCgUCCuCGCCggggccggccccggCGCCCGAGGcccccgcggGCCg -3'
miRNA:   3'- -CGGGGG-AGG-GCGG--------------GCGGGCUCCa--------UGG- -5'
29497 3' -65.2 NC_006151.1 + 10547 0.72 0.244866
Target:  5'- cGCCCCgUUCCGCCCggcGCCCaauGGcgcgGCCg -3'
miRNA:   3'- -CGGGGgAGGGCGGG---CGGGcu-CCa---UGG- -5'
29497 3' -65.2 NC_006151.1 + 42567 0.71 0.248746
Target:  5'- cCCCCCUCuccggcgccacgcgCCGCCCGucCCCGAGagGCCu -3'
miRNA:   3'- cGGGGGAG--------------GGCGGGC--GGGCUCcaUGG- -5'
29497 3' -65.2 NC_006151.1 + 108319 0.71 0.250424
Target:  5'- cGCCCCCcgcgCCCggGCCCGCCCcaucgGCCa -3'
miRNA:   3'- -CGGGGGa---GGG--CGGGCGGGcuccaUGG- -5'
29497 3' -65.2 NC_006151.1 + 31225 0.71 0.255515
Target:  5'- gGCCCCCggCCgGCCgGCCCGGcgagcgagcgggcGGgcgaGCCg -3'
miRNA:   3'- -CGGGGGa-GGgCGGgCGGGCU-------------CCa---UGG- -5'
29497 3' -65.2 NC_006151.1 + 24189 0.71 0.256086
Target:  5'- aGCCCCCgUCUCGggcaGCCCGAGGcgaGCCa -3'
miRNA:   3'- -CGGGGG-AGGGCggg-CGGGCUCCa--UGG- -5'
29497 3' -65.2 NC_006151.1 + 33770 0.71 0.261853
Target:  5'- aCCCUC-CCCGCCCGCCCcguccgACCg -3'
miRNA:   3'- cGGGGGaGGGCGGGCGGGcucca-UGG- -5'
29497 3' -65.2 NC_006151.1 + 127786 0.71 0.267132
Target:  5'- uCCCCCUCCCcCgCCGCCgcgcgcgggggcgCGAGGU-CCu -3'
miRNA:   3'- cGGGGGAGGGcG-GGCGG-------------GCUCCAuGG- -5'
29497 3' -65.2 NC_006151.1 + 9106 0.71 0.267132
Target:  5'- cGCCCCCgaCCCGCCucgcacuCGCCCGAcacucgGCCc -3'
miRNA:   3'- -CGGGGGa-GGGCGG-------GCGGGCUcca---UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.