miRNA display CGI


Results 21 - 40 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29497 3' -65.2 NC_006151.1 + 48778 0.75 0.153882
Target:  5'- cGCCUCCgcCCCGCCCcccgacCCCGGGGcGCCc -3'
miRNA:   3'- -CGGGGGa-GGGCGGGc-----GGGCUCCaUGG- -5'
29497 3' -65.2 NC_006151.1 + 134929 0.75 0.157593
Target:  5'- cUUCCCUCCCGCCCGCCCucuccGGcUACa -3'
miRNA:   3'- cGGGGGAGGGCGGGCGGGcu---CC-AUGg -5'
29497 3' -65.2 NC_006151.1 + 48554 0.74 0.161768
Target:  5'- gGCCCCCcgccgaguaagagacCCUGCggccugCCGCCCGGGGUGCg -3'
miRNA:   3'- -CGGGGGa--------------GGGCG------GGCGGGCUCCAUGg -5'
29497 3' -65.2 NC_006151.1 + 100153 0.74 0.165258
Target:  5'- cGCgCCCUCCgGCgCCGCCUgGAGGacaugGCCa -3'
miRNA:   3'- -CGgGGGAGGgCG-GGCGGG-CUCCa----UGG- -5'
29497 3' -65.2 NC_006151.1 + 44870 0.74 0.165258
Target:  5'- cGCCCUCUCUCGCCCGaCCuCGGcGGUGu- -3'
miRNA:   3'- -CGGGGGAGGGCGGGC-GG-GCU-CCAUgg -5'
29497 3' -65.2 NC_006151.1 + 66021 0.74 0.169215
Target:  5'- cGCCUCCgcaaagUCCGCCCGCgUGAaccgccGGUGCCu -3'
miRNA:   3'- -CGGGGGa-----GGGCGGGCGgGCU------CCAUGG- -5'
29497 3' -65.2 NC_006151.1 + 39556 0.74 0.169215
Target:  5'- gGCCUCCUucgCCCGCCUGCaccCCGGGGccgaGCCg -3'
miRNA:   3'- -CGGGGGA---GGGCGGGCG---GGCUCCa---UGG- -5'
29497 3' -65.2 NC_006151.1 + 11436 0.74 0.169215
Target:  5'- cGCCCacgcaacuCCUCCCGCCCGCgugcccCCGGGG--CCa -3'
miRNA:   3'- -CGGG--------GGAGGGCGGGCG------GGCUCCauGG- -5'
29497 3' -65.2 NC_006151.1 + 137416 0.74 0.181598
Target:  5'- gGCgCCCUCgCCG-CCGCCgCGGGGUccGCCu -3'
miRNA:   3'- -CGgGGGAG-GGCgGGCGG-GCUCCA--UGG- -5'
29497 3' -65.2 NC_006151.1 + 84531 0.73 0.1846
Target:  5'- cGCCCCCguUCCCcgugggcuucuggGCCCGCCCGGGcuucagcgaggGCCu -3'
miRNA:   3'- -CGGGGG--AGGG-------------CGGGCGGGCUCca---------UGG- -5'
29497 3' -65.2 NC_006151.1 + 38165 0.73 0.1859
Target:  5'- uGUCgCCCUCgUCGCCCGCaCCGuGGcGCCg -3'
miRNA:   3'- -CGG-GGGAG-GGCGGGCG-GGCuCCaUGG- -5'
29497 3' -65.2 NC_006151.1 + 124664 0.73 0.190293
Target:  5'- uCCCCCUUCUacgGCCUGCgCGAGGggGCCc -3'
miRNA:   3'- cGGGGGAGGG---CGGGCGgGCUCCa-UGG- -5'
29497 3' -65.2 NC_006151.1 + 10855 0.73 0.190293
Target:  5'- uCCCCUUCCCcucgccccgGCCC-CCCGGcuuGGUGCCg -3'
miRNA:   3'- cGGGGGAGGG---------CGGGcGGGCU---CCAUGG- -5'
29497 3' -65.2 NC_006151.1 + 74166 0.73 0.190293
Target:  5'- uGCCCaCCUCCuCGUCCGUCUcGGGcACCa -3'
miRNA:   3'- -CGGG-GGAGG-GCGGGCGGGcUCCaUGG- -5'
29497 3' -65.2 NC_006151.1 + 59327 0.73 0.192972
Target:  5'- cGCCCCCgCCCGCCCccagcgcgcucaggGCCgcgcgcaCGGGGcGCCg -3'
miRNA:   3'- -CGGGGGaGGGCGGG--------------CGG-------GCUCCaUGG- -5'
29497 3' -65.2 NC_006151.1 + 40014 0.73 0.194776
Target:  5'- uGCCCCCUucgagaccagcgUCCGCgccgCCGCCgGGGGcGCCg -3'
miRNA:   3'- -CGGGGGA------------GGGCG----GGCGGgCUCCaUGG- -5'
29497 3' -65.2 NC_006151.1 + 69510 0.73 0.199352
Target:  5'- cGCCUCCUCCgccgcCGCgCCGCgCGAGGgcGCCc -3'
miRNA:   3'- -CGGGGGAGG-----GCG-GGCGgGCUCCa-UGG- -5'
29497 3' -65.2 NC_006151.1 + 44004 0.73 0.199352
Target:  5'- aCCCCCcCCCGCagcccCCGCCCcgcGGGGaGCCg -3'
miRNA:   3'- cGGGGGaGGGCG-----GGCGGG---CUCCaUGG- -5'
29497 3' -65.2 NC_006151.1 + 137652 0.73 0.20402
Target:  5'- cGCCCCCgUCCCggcggacgagcGCCCGCCgUGcGGcUGCCg -3'
miRNA:   3'- -CGGGGG-AGGG-----------CGGGCGG-GCuCC-AUGG- -5'
29497 3' -65.2 NC_006151.1 + 97926 0.73 0.20402
Target:  5'- cGCCgCCgaggCCgCGCCCGCCCucgucGAGGgcgaGCCa -3'
miRNA:   3'- -CGGgGGa---GG-GCGGGCGGG-----CUCCa---UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.