miRNA display CGI


Results 21 - 40 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29497 3' -65.2 NC_006151.1 + 10611 0.7 0.292275
Target:  5'- cCUCCCUcCCCGCgCGCCCGcgugcgcucGUGCCg -3'
miRNA:   3'- cGGGGGA-GGGCGgGCGGGCuc-------CAUGG- -5'
29497 3' -65.2 NC_006151.1 + 10855 0.73 0.190293
Target:  5'- uCCCCUUCCCcucgccccgGCCC-CCCGGcuuGGUGCCg -3'
miRNA:   3'- cGGGGGAGGG---------CGGGcGGGCU---CCAUGG- -5'
29497 3' -65.2 NC_006151.1 + 11006 0.76 0.115174
Target:  5'- gGCCCCggCUCGCCCGCCCGcucgcucgccGGGccgGCCg -3'
miRNA:   3'- -CGGGGgaGGGCGGGCGGGC----------UCCa--UGG- -5'
29497 3' -65.2 NC_006151.1 + 11289 0.75 0.153882
Target:  5'- cGUCCCCguccCCCGCCCGCucucCCGGGccGCCg -3'
miRNA:   3'- -CGGGGGa---GGGCGGGCG----GGCUCcaUGG- -5'
29497 3' -65.2 NC_006151.1 + 11436 0.74 0.169215
Target:  5'- cGCCCacgcaacuCCUCCCGCCCGCgugcccCCGGGG--CCa -3'
miRNA:   3'- -CGGG--------GGAGGGCGGGCG------GGCUCCauGG- -5'
29497 3' -65.2 NC_006151.1 + 11509 0.75 0.136164
Target:  5'- uGCCCCCgcCCCGCCCgcggcacuccggGCCCGcgugagaGGGUACa -3'
miRNA:   3'- -CGGGGGa-GGGCGGG------------CGGGC-------UCCAUGg -5'
29497 3' -65.2 NC_006151.1 + 11575 0.77 0.099416
Target:  5'- -aCCCC-CCCGCCCGCCgGGGGagGCUu -3'
miRNA:   3'- cgGGGGaGGGCGGGCGGgCUCCa-UGG- -5'
29497 3' -65.2 NC_006151.1 + 12246 0.66 0.523688
Target:  5'- cCCCCCUCCUGCCuccauucaucaaucuCGUCC-AGGccgcggGCCc -3'
miRNA:   3'- cGGGGGAGGGCGG---------------GCGGGcUCCa-----UGG- -5'
29497 3' -65.2 NC_006151.1 + 12661 0.67 0.432304
Target:  5'- aGCCCCCg-CCGCCgCGgCCGcAGccGCCg -3'
miRNA:   3'- -CGGGGGagGGCGG-GCgGGC-UCcaUGG- -5'
29497 3' -65.2 NC_006151.1 + 12819 0.69 0.361216
Target:  5'- cGUCCCCUCuccccgCCGCCC-CCCGcGGccacACCg -3'
miRNA:   3'- -CGGGGGAG------GGCGGGcGGGCuCCa---UGG- -5'
29497 3' -65.2 NC_006151.1 + 12983 0.72 0.223652
Target:  5'- cCCaCCCUCCCGacucaCCCGuCCCGGGGgauuCCc -3'
miRNA:   3'- cGG-GGGAGGGC-----GGGC-GGGCUCCau--GG- -5'
29497 3' -65.2 NC_006151.1 + 13723 0.67 0.483981
Target:  5'- uCCCCCauuggccggUCCCggacGCCCGuCCCGcGGgccggACCg -3'
miRNA:   3'- cGGGGG---------AGGG----CGGGC-GGGCuCCa----UGG- -5'
29497 3' -65.2 NC_006151.1 + 14140 0.67 0.452598
Target:  5'- cGCgCCCCgagccgacgaggagCCgCGcCCCGCUCGAGGacGCCc -3'
miRNA:   3'- -CG-GGGGa-------------GG-GC-GGGCGGGCUCCa-UGG- -5'
29497 3' -65.2 NC_006151.1 + 14811 0.69 0.33234
Target:  5'- cGCCCCCgacccaccgcgUCCGCCgCGCCCauGG-ACCg -3'
miRNA:   3'- -CGGGGGa----------GGGCGG-GCGGGcuCCaUGG- -5'
29497 3' -65.2 NC_006151.1 + 14875 0.69 0.339397
Target:  5'- uGCCCUC-CCCGCCguucuCGCCCGucG-ACCc -3'
miRNA:   3'- -CGGGGGaGGGCGG-----GCGGGCucCaUGG- -5'
29497 3' -65.2 NC_006151.1 + 15000 0.73 0.213643
Target:  5'- aGCaCCCCgaguacgggccCCCGCCCGaCCCcgagGAGGUGCg -3'
miRNA:   3'- -CG-GGGGa----------GGGCGGGC-GGG----CUCCAUGg -5'
29497 3' -65.2 NC_006151.1 + 15238 0.66 0.53844
Target:  5'- gGCCCCCUgcuggcaggcCCUGCUccagcucuCGCCCGAGcagagcGCCc -3'
miRNA:   3'- -CGGGGGA----------GGGCGG--------GCGGGCUCca----UGG- -5'
29497 3' -65.2 NC_006151.1 + 15340 0.71 0.285976
Target:  5'- cGUCCUCUcCCCGCCgGUCauCGAGGgcCCg -3'
miRNA:   3'- -CGGGGGA-GGGCGGgCGG--GCUCCauGG- -5'
29497 3' -65.2 NC_006151.1 + 15902 0.7 0.292275
Target:  5'- cGCgCCCCgacgcggCCCGCcgCCGCCCcguGAGGcggGCCu -3'
miRNA:   3'- -CG-GGGGa------GGGCG--GGCGGG---CUCCa--UGG- -5'
29497 3' -65.2 NC_006151.1 + 16894 0.67 0.449179
Target:  5'- cGCgUCCguugCCgCGCCCGCCCc-GGcGCCg -3'
miRNA:   3'- -CGgGGGa---GG-GCGGGCGGGcuCCaUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.