miRNA display CGI


Results 1 - 20 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29497 3' -65.2 NC_006151.1 + 1 0.7 0.292275
Target:  5'- cCCaCCC-CCCGCUC-CCCGGGG-GCCg -3'
miRNA:   3'- cGG-GGGaGGGCGGGcGGGCUCCaUGG- -5'
29497 3' -65.2 NC_006151.1 + 706 0.66 0.53844
Target:  5'- -gCCCCUUCCG-UCGCaCCGGGGguCCg -3'
miRNA:   3'- cgGGGGAGGGCgGGCG-GGCUCCauGG- -5'
29497 3' -65.2 NC_006151.1 + 2160 0.72 0.243219
Target:  5'- aGUCCCCgUCCuCGCCggggccggccccggCGCCCGAGGcccccgcggGCCg -3'
miRNA:   3'- -CGGGGG-AGG-GCGG--------------GCGGGCUCCa--------UGG- -5'
29497 3' -65.2 NC_006151.1 + 2468 0.68 0.415804
Target:  5'- aGCCCCCagCgGUUgGCCgCGcGGUGCCc -3'
miRNA:   3'- -CGGGGGagGgCGGgCGG-GCuCCAUGG- -5'
29497 3' -65.2 NC_006151.1 + 4184 0.66 0.53844
Target:  5'- gGCCgucaCCUCCUcgaggcagGCggGCCCGAGGgcgGCCg -3'
miRNA:   3'- -CGGg---GGAGGG--------CGggCGGGCUCCa--UGG- -5'
29497 3' -65.2 NC_006151.1 + 5352 0.67 0.466412
Target:  5'- cGCCCUCUCCgGCgCgGCgCCGGcGGgGCUg -3'
miRNA:   3'- -CGGGGGAGGgCG-GgCG-GGCU-CCaUGG- -5'
29497 3' -65.2 NC_006151.1 + 5607 0.67 0.439852
Target:  5'- gGUCCCCUCCgGCggagggggcgccgCCGCCgCcGGGcGCCg -3'
miRNA:   3'- -CGGGGGAGGgCG-------------GGCGG-GcUCCaUGG- -5'
29497 3' -65.2 NC_006151.1 + 5781 0.66 0.528282
Target:  5'- cCCCCCUCgCGggggaccaucUCCGCggggcugCCGAGGgGCCg -3'
miRNA:   3'- cGGGGGAGgGC----------GGGCG-------GGCUCCaUGG- -5'
29497 3' -65.2 NC_006151.1 + 6904 0.66 0.514547
Target:  5'- cGCCCacuuCCUCUCGCgucuacuuugcauguCCGgcCCCGAGGgcGCCa -3'
miRNA:   3'- -CGGG----GGAGGGCG---------------GGC--GGGCUCCa-UGG- -5'
29497 3' -65.2 NC_006151.1 + 7019 0.67 0.466412
Target:  5'- gGCCCCCgcggcggccaUCUCgGCUCGCCCGG---GCCa -3'
miRNA:   3'- -CGGGGG----------AGGG-CGGGCGGGCUccaUGG- -5'
29497 3' -65.2 NC_006151.1 + 7619 0.66 0.529202
Target:  5'- --aCCCUCCCGCgaCC-CCCGcGGUcGCCc -3'
miRNA:   3'- cggGGGAGGGCG--GGcGGGCuCCA-UGG- -5'
29497 3' -65.2 NC_006151.1 + 7790 0.66 0.529202
Target:  5'- aGCCCggaCCCGCCCGgaCCCGgaaggaAGGaGCCg -3'
miRNA:   3'- -CGGGggaGGGCGGGC--GGGC------UCCaUGG- -5'
29497 3' -65.2 NC_006151.1 + 8304 0.71 0.285976
Target:  5'- cGCCgCgUCCCGCCCcgagccCCCGGGGcgcgcggGCCu -3'
miRNA:   3'- -CGGgGgAGGGCGGGc-----GGGCUCCa------UGG- -5'
29497 3' -65.2 NC_006151.1 + 8710 0.67 0.483095
Target:  5'- cGUCUCCgUCuCCGCCguCGCCUcgguccgaggaggGGGGUGCCc -3'
miRNA:   3'- -CGGGGG-AG-GGCGG--GCGGG-------------CUCCAUGG- -5'
29497 3' -65.2 NC_006151.1 + 8934 0.69 0.353836
Target:  5'- cGCCCCCgCCC-CCUGuCCCGGucccGGUcCCa -3'
miRNA:   3'- -CGGGGGaGGGcGGGC-GGGCU----CCAuGG- -5'
29497 3' -65.2 NC_006151.1 + 9028 0.88 0.017304
Target:  5'- aCCCCCUCCCGCCCG-CCGGGGcGCCc -3'
miRNA:   3'- cGGGGGAGGGCGGGCgGGCUCCaUGG- -5'
29497 3' -65.2 NC_006151.1 + 9106 0.71 0.267132
Target:  5'- cGCCCCCgaCCCGCCucgcacuCGCCCGAcacucgGCCc -3'
miRNA:   3'- -CGGGGGa-GGGCGG-------GCGGGCUcca---UGG- -5'
29497 3' -65.2 NC_006151.1 + 9170 0.71 0.273702
Target:  5'- cCCCCCUCcaCCGCCCGCCCuc---GCCc -3'
miRNA:   3'- cGGGGGAG--GGCGGGCGGGcuccaUGG- -5'
29497 3' -65.2 NC_006151.1 + 9684 0.8 0.060397
Target:  5'- uCCCCCU-CCGCCCGgCCGcGGGUGCCc -3'
miRNA:   3'- cGGGGGAgGGCGGGCgGGC-UCCAUGG- -5'
29497 3' -65.2 NC_006151.1 + 10547 0.72 0.244866
Target:  5'- cGCCCCgUUCCGCCCggcGCCCaauGGcgcgGCCg -3'
miRNA:   3'- -CGGGGgAGGGCGGG---CGGGcu-CCa---UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.