miRNA display CGI


Results 1 - 20 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29497 3' -65.2 NC_006151.1 + 142274 0.66 0.520024
Target:  5'- cGCCCCgUCCCGgCgGCCaGAccgGCCg -3'
miRNA:   3'- -CGGGGgAGGGCgGgCGGgCUccaUGG- -5'
29497 3' -65.2 NC_006151.1 + 141781 0.67 0.478676
Target:  5'- gGUUCUgUCCCGgggacgcgggucgguCCCGCCCcGAGGgcacggGCCg -3'
miRNA:   3'- -CGGGGgAGGGC---------------GGGCGGG-CUCCa-----UGG- -5'
29497 3' -65.2 NC_006151.1 + 141590 0.66 0.510909
Target:  5'- cCCCCCgggcgagagCCGCCCGgC-GAGGcUGCCg -3'
miRNA:   3'- cGGGGGag-------GGCGGGCgGgCUCC-AUGG- -5'
29497 3' -65.2 NC_006151.1 + 140022 0.71 0.273702
Target:  5'- gGCCgaCCUgCaCCGCCUGUuuGAGGUGCg -3'
miRNA:   3'- -CGGg-GGA-G-GGCGGGCGggCUCCAUGg -5'
29497 3' -65.2 NC_006151.1 + 139595 0.67 0.432304
Target:  5'- cGCCCCC-CCgagcggcgGCCCGUCCGGGcGcgGCUg -3'
miRNA:   3'- -CGGGGGaGGg-------CGGGCGGGCUC-Ca-UGG- -5'
29497 3' -65.2 NC_006151.1 + 137652 0.73 0.20402
Target:  5'- cGCCCCCgUCCCggcggacgagcGCCCGCCgUGcGGcUGCCg -3'
miRNA:   3'- -CGGGGG-AGGG-----------CGGGCGG-GCuCC-AUGG- -5'
29497 3' -65.2 NC_006151.1 + 137416 0.74 0.181598
Target:  5'- gGCgCCCUCgCCG-CCGCCgCGGGGUccGCCu -3'
miRNA:   3'- -CGgGGGAG-GGCgGGCGG-GCUCCA--UGG- -5'
29497 3' -65.2 NC_006151.1 + 137267 0.72 0.234057
Target:  5'- cGCgCCCggugCCCGCgggcaCGCUCGAGGcgGCCa -3'
miRNA:   3'- -CGgGGGa---GGGCGg----GCGGGCUCCa-UGG- -5'
29497 3' -65.2 NC_006151.1 + 136951 0.66 0.510909
Target:  5'- gGCgCCgUCCUGCgCCGCCUGcuGGagcugGCCg -3'
miRNA:   3'- -CGgGGgAGGGCG-GGCGGGCu-CCa----UGG- -5'
29497 3' -65.2 NC_006151.1 + 135057 0.67 0.475156
Target:  5'- uCCCCCUCCuCGucuuccCCCGCCuccucgggCGGGGgcggcgggGCCg -3'
miRNA:   3'- cGGGGGAGG-GC------GGGCGG--------GCUCCa-------UGG- -5'
29497 3' -65.2 NC_006151.1 + 134929 0.75 0.157593
Target:  5'- cUUCCCUCCCGCCCGCCCucuccGGcUACa -3'
miRNA:   3'- cGGGGGAGGGCGGGCGGGcu---CC-AUGg -5'
29497 3' -65.2 NC_006151.1 + 134406 0.68 0.389441
Target:  5'- aUCCCCUgCCCGCgCGagcuggugcugcccCCCGGGGgcGCCg -3'
miRNA:   3'- cGGGGGA-GGGCGgGC--------------GGGCUCCa-UGG- -5'
29497 3' -65.2 NC_006151.1 + 132999 0.67 0.457752
Target:  5'- -aCUuuUCCCuUCCGCCCGgGGGUGCUc -3'
miRNA:   3'- cgGGggAGGGcGGGCGGGC-UCCAUGG- -5'
29497 3' -65.2 NC_006151.1 + 131607 0.68 0.399696
Target:  5'- cCCCCCUCCgGgCCgGCCCGcGGcuuuauacGCCc -3'
miRNA:   3'- cGGGGGAGGgC-GGgCGGGCuCCa-------UGG- -5'
29497 3' -65.2 NC_006151.1 + 129519 0.67 0.475156
Target:  5'- aGCCgCUUgCCGCCgacggggggGCCCGGGGccGCCg -3'
miRNA:   3'- -CGGgGGAgGGCGGg--------CGGGCUCCa-UGG- -5'
29497 3' -65.2 NC_006151.1 + 128525 0.66 0.519109
Target:  5'- cGCCCgagCCCgaggccacggcggGCCCGCCgGcgcGGUGCCg -3'
miRNA:   3'- -CGGGggaGGG-------------CGGGCGGgCu--CCAUGG- -5'
29497 3' -65.2 NC_006151.1 + 127786 0.71 0.267132
Target:  5'- uCCCCCUCCCcCgCCGCCgcgcgcgggggcgCGAGGU-CCu -3'
miRNA:   3'- cGGGGGAGGGcG-GGCGG-------------GCUCCAuGG- -5'
29497 3' -65.2 NC_006151.1 + 125245 0.71 0.279786
Target:  5'- cGCUCCC-CCgGCCCggcggggacGCCCGAGccGCCg -3'
miRNA:   3'- -CGGGGGaGGgCGGG---------CGGGCUCcaUGG- -5'
29497 3' -65.2 NC_006151.1 + 125209 0.71 0.273702
Target:  5'- gGCCCCgCggccCCCGCggCCGCCCGucGGgcCCg -3'
miRNA:   3'- -CGGGG-Ga---GGGCG--GGCGGGCu-CCauGG- -5'
29497 3' -65.2 NC_006151.1 + 124664 0.73 0.190293
Target:  5'- uCCCCCUUCUacgGCCUGCgCGAGGggGCCc -3'
miRNA:   3'- cGGGGGAGGG---CGGGCGgGCUCCa-UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.