miRNA display CGI


Results 1 - 20 of 215 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29497 3' -65.2 NC_006151.1 + 34259 1.13 0.000274
Target:  5'- cGCCCCCUCCCGCCCGCCCGAGGUACCg -3'
miRNA:   3'- -CGGGGGAGGGCGGGCGGGCUCCAUGG- -5'
29497 3' -65.2 NC_006151.1 + 9028 0.88 0.017304
Target:  5'- aCCCCCUCCCGCCCG-CCGGGGcGCCc -3'
miRNA:   3'- cGGGGGAGGGCGGGCgGGCUCCaUGG- -5'
29497 3' -65.2 NC_006151.1 + 38891 0.84 0.036385
Target:  5'- cGCCgCCUaCUGCCCGCCCGAGGUgGCCc -3'
miRNA:   3'- -CGGgGGAgGGCGGGCGGGCUCCA-UGG- -5'
29497 3' -65.2 NC_006151.1 + 81332 0.82 0.050619
Target:  5'- cGCCCCCUCguccgucgccgCCGCCgCGCCCGGGGccCCg -3'
miRNA:   3'- -CGGGGGAG-----------GGCGG-GCGGGCUCCauGG- -5'
29497 3' -65.2 NC_006151.1 + 60700 0.81 0.051915
Target:  5'- cGCCCgCCgcgCCCGCCgCGaccucggcCCCGAGGUGCCg -3'
miRNA:   3'- -CGGG-GGa--GGGCGG-GC--------GGGCUCCAUGG- -5'
29497 3' -65.2 NC_006151.1 + 38060 0.8 0.060397
Target:  5'- cGCCCUCgggCCCGCCUGCCuCGAGGaggugacgGCCg -3'
miRNA:   3'- -CGGGGGa--GGGCGGGCGG-GCUCCa-------UGG- -5'
29497 3' -65.2 NC_006151.1 + 9684 0.8 0.060397
Target:  5'- uCCCCCU-CCGCCCGgCCGcGGGUGCCc -3'
miRNA:   3'- cGGGGGAgGGCGGGCgGGC-UCCAUGG- -5'
29497 3' -65.2 NC_006151.1 + 87688 0.79 0.071992
Target:  5'- cGCuCCCUUCCCGCCCGCcCCGAcg-ACCa -3'
miRNA:   3'- -CG-GGGGAGGGCGGGCG-GGCUccaUGG- -5'
29497 3' -65.2 NC_006151.1 + 100733 0.79 0.07568
Target:  5'- cGCCgCCCgcgCCCGCCuucaCGCCCGAGGaGCUg -3'
miRNA:   3'- -CGG-GGGa--GGGCGG----GCGGGCUCCaUGG- -5'
29497 3' -65.2 NC_006151.1 + 50858 0.78 0.083607
Target:  5'- gGCCgCCCUCCCGCgcccccggaccCCGuCCCGGGGccgGCCg -3'
miRNA:   3'- -CGG-GGGAGGGCG-----------GGC-GGGCUCCa--UGG- -5'
29497 3' -65.2 NC_006151.1 + 32926 0.78 0.087862
Target:  5'- uCCCCCgaggacCCCGCucCCGCCUGuGGUGCCg -3'
miRNA:   3'- cGGGGGa-----GGGCG--GGCGGGCuCCAUGG- -5'
29497 3' -65.2 NC_006151.1 + 11575 0.77 0.099416
Target:  5'- -aCCCC-CCCGCCCGCCgGGGGagGCUu -3'
miRNA:   3'- cgGGGGaGGGCGGGCGGgCUCCa-UGG- -5'
29497 3' -65.2 NC_006151.1 + 46830 0.76 0.115174
Target:  5'- uGCCCCCgagacCgCCGCCC-CCCGGGGcggGCCu -3'
miRNA:   3'- -CGGGGGa----G-GGCGGGcGGGCUCCa--UGG- -5'
29497 3' -65.2 NC_006151.1 + 11006 0.76 0.115174
Target:  5'- gGCCCCggCUCGCCCGCCCGcucgcucgccGGGccgGCCg -3'
miRNA:   3'- -CGGGGgaGGGCGGGCGGGC----------UCCa--UGG- -5'
29497 3' -65.2 NC_006151.1 + 117919 0.76 0.126944
Target:  5'- cGCCgCCggaCCCGUCCGCCCggaGAGGggACCg -3'
miRNA:   3'- -CGGgGGa--GGGCGGGCGGG---CUCCa-UGG- -5'
29497 3' -65.2 NC_006151.1 + 11509 0.75 0.136164
Target:  5'- uGCCCCCgcCCCGCCCgcggcacuccggGCCCGcgugagaGGGUACa -3'
miRNA:   3'- -CGGGGGa-GGGCGGG------------CGGGC-------UCCAUGg -5'
29497 3' -65.2 NC_006151.1 + 38405 0.75 0.13982
Target:  5'- cGCCCCCUCCgGCCUcCCCGGcuccGGgcCCu -3'
miRNA:   3'- -CGGGGGAGGgCGGGcGGGCU----CCauGG- -5'
29497 3' -65.2 NC_006151.1 + 43965 0.75 0.150251
Target:  5'- cGCCCCgaCCCGCCCGCCUGcucUAUCa -3'
miRNA:   3'- -CGGGGgaGGGCGGGCGGGCuccAUGG- -5'
29497 3' -65.2 NC_006151.1 + 37137 0.75 0.150251
Target:  5'- cGCCCCa-CUCGCCCGCgCCGGGccGCCa -3'
miRNA:   3'- -CGGGGgaGGGCGGGCG-GGCUCcaUGG- -5'
29497 3' -65.2 NC_006151.1 + 11289 0.75 0.153882
Target:  5'- cGUCCCCguccCCCGCCCGCucucCCGGGccGCCg -3'
miRNA:   3'- -CGGGGGa---GGGCGGGCG----GGCUCcaUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.