miRNA display CGI


Results 21 - 40 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29497 3' -65.2 NC_006151.1 + 5781 0.66 0.528282
Target:  5'- cCCCCCUCgCGggggaccaucUCCGCggggcugCCGAGGgGCCg -3'
miRNA:   3'- cGGGGGAGgGC----------GGGCG-------GGCUCCaUGG- -5'
29497 3' -65.2 NC_006151.1 + 12246 0.66 0.523688
Target:  5'- cCCCCCUCCUGCCuccauucaucaaucuCGUCC-AGGccgcggGCCc -3'
miRNA:   3'- cGGGGGAGGGCGG---------------GCGGGcUCCa-----UGG- -5'
29497 3' -65.2 NC_006151.1 + 27236 0.66 0.523688
Target:  5'- cGCgCaCCUCCUcggggucgggcggggGCCCGUacUCGGGGUGCUc -3'
miRNA:   3'- -CGgG-GGAGGG---------------CGGGCG--GGCUCCAUGG- -5'
29497 3' -65.2 NC_006151.1 + 35759 0.66 0.520024
Target:  5'- aGCCCUCgacggaCGCCCGacccaCCGAGGcucucgGCCc -3'
miRNA:   3'- -CGGGGGagg---GCGGGCg----GGCUCCa-----UGG- -5'
29497 3' -65.2 NC_006151.1 + 142274 0.66 0.520024
Target:  5'- cGCCCCgUCCCGgCgGCCaGAccgGCCg -3'
miRNA:   3'- -CGGGGgAGGGCgGgCGGgCUccaUGG- -5'
29497 3' -65.2 NC_006151.1 + 45925 0.66 0.520024
Target:  5'- -aCCCUgacgagCaCCGCCUGCCCGcuGUGCa -3'
miRNA:   3'- cgGGGGa-----G-GGCGGGCGGGCucCAUGg -5'
29497 3' -65.2 NC_006151.1 + 58244 0.66 0.520024
Target:  5'- cGCCgCCaCgCGCCgGCCCGcGG-GCCg -3'
miRNA:   3'- -CGGgGGaGgGCGGgCGGGCuCCaUGG- -5'
29497 3' -65.2 NC_006151.1 + 128525 0.66 0.519109
Target:  5'- cGCCCgagCCCgaggccacggcggGCCCGCCgGcgcGGUGCCg -3'
miRNA:   3'- -CGGGggaGGG-------------CGGGCGGgCu--CCAUGG- -5'
29497 3' -65.2 NC_006151.1 + 109990 0.66 0.519109
Target:  5'- aCCCgCgagCCCGCCgaggaggCGCCCGAGcuggACCc -3'
miRNA:   3'- cGGGgGa--GGGCGG-------GCGGGCUCca--UGG- -5'
29497 3' -65.2 NC_006151.1 + 6904 0.66 0.514547
Target:  5'- cGCCCacuuCCUCUCGCgucuacuuugcauguCCGgcCCCGAGGgcGCCa -3'
miRNA:   3'- -CGGG----GGAGGGCG---------------GGC--GGGCUCCa-UGG- -5'
29497 3' -65.2 NC_006151.1 + 86981 0.66 0.510909
Target:  5'- cGCCaCCgccgCUCGCCCucGCCCGAGccccgGCCc -3'
miRNA:   3'- -CGGgGGa---GGGCGGG--CGGGCUCca---UGG- -5'
29497 3' -65.2 NC_006151.1 + 93045 0.66 0.510909
Target:  5'- cGCCuCCCcCCCGCgggccacuCCGUCCGcGGgcuCCg -3'
miRNA:   3'- -CGG-GGGaGGGCG--------GGCGGGCuCCau-GG- -5'
29497 3' -65.2 NC_006151.1 + 136951 0.66 0.510909
Target:  5'- gGCgCCgUCCUGCgCCGCCUGcuGGagcugGCCg -3'
miRNA:   3'- -CGgGGgAGGGCG-GGCGGGCu-CCa----UGG- -5'
29497 3' -65.2 NC_006151.1 + 141590 0.66 0.510909
Target:  5'- cCCCCCgggcgagagCCGCCCGgC-GAGGcUGCCg -3'
miRNA:   3'- cGGGGGag-------GGCGGGCgGgCUCC-AUGG- -5'
29497 3' -65.2 NC_006151.1 + 112528 0.66 0.507281
Target:  5'- cGCCCUCUUCCGCgagcugaucuucgCCGCCCacgugaugcuggacGAGGaggACUc -3'
miRNA:   3'- -CGGGGGAGGGCG-------------GGCGGG--------------CUCCa--UGG- -5'
29497 3' -65.2 NC_006151.1 + 37467 0.66 0.501861
Target:  5'- gGCCCgCUaCCgCGCCgCGgCCGGGcccGUGCCc -3'
miRNA:   3'- -CGGGgGA-GG-GCGG-GCgGGCUC---CAUGG- -5'
29497 3' -65.2 NC_006151.1 + 57453 0.66 0.501861
Target:  5'- gGCCCCCg--CGUCgGCC--AGGUGCCg -3'
miRNA:   3'- -CGGGGGaggGCGGgCGGgcUCCAUGG- -5'
29497 3' -65.2 NC_006151.1 + 42225 0.66 0.493778
Target:  5'- cCCCCCUuuaagcCCCGCCCccuuuuuucgcggccCCCGGGGaGCg -3'
miRNA:   3'- cGGGGGA------GGGCGGGc--------------GGGCUCCaUGg -5'
29497 3' -65.2 NC_006151.1 + 28210 0.66 0.492883
Target:  5'- cGCaCCCCUUuaUCGCCCcgUCGAGGggGCCg -3'
miRNA:   3'- -CG-GGGGAG--GGCGGGcgGGCUCCa-UGG- -5'
29497 3' -65.2 NC_006151.1 + 37319 0.67 0.487533
Target:  5'- gGCCCCCgccgaccgacgggCCGCugcucaccCCGCUCGGGGaGCCc -3'
miRNA:   3'- -CGGGGGag-----------GGCG--------GGCGGGCUCCaUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.