miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29497 5' -56.8 NC_006151.1 + 119699 0.68 0.769291
Target:  5'- aACGACAgCGAGCCcccGAAGGCGaucaUGCAGg -3'
miRNA:   3'- -UGCUGU-GCUCGGc--CUUCUGCc---ACGUU- -5'
29497 5' -56.8 NC_006151.1 + 113026 0.66 0.856296
Target:  5'- gACGACGCGugcGCCGGGugcugcGCGGcgGCGGa -3'
miRNA:   3'- -UGCUGUGCu--CGGCCUuc----UGCCa-CGUU- -5'
29497 5' -56.8 NC_006151.1 + 112033 0.72 0.497974
Target:  5'- gGCGggaGCugGGGCCGGcGGGCGGgcgGCGg -3'
miRNA:   3'- -UGC---UGugCUCGGCCuUCUGCCa--CGUu -5'
29497 5' -56.8 NC_006151.1 + 110738 0.7 0.618633
Target:  5'- cACGcaACACgcuaGAGUCGaGAGGAUGGUGCAAc -3'
miRNA:   3'- -UGC--UGUG----CUCGGC-CUUCUGCCACGUU- -5'
29497 5' -56.8 NC_006151.1 + 106191 0.66 0.856296
Target:  5'- cGCcGCugGAGCCGG----CGGUGCGg -3'
miRNA:   3'- -UGcUGugCUCGGCCuucuGCCACGUu -5'
29497 5' -56.8 NC_006151.1 + 103962 0.66 0.861705
Target:  5'- cGCGGCgcgccagcgcgucgGCGAGCUGGA-GGCGGccgugGCGg -3'
miRNA:   3'- -UGCUG--------------UGCUCGGCCUuCUGCCa----CGUu -5'
29497 5' -56.8 NC_006151.1 + 103771 0.71 0.598095
Target:  5'- gGCGcuGCGCGAGUCGGAGcgcuGGCGGcgcUGCAGg -3'
miRNA:   3'- -UGC--UGUGCUCGGCCUU----CUGCC---ACGUU- -5'
29497 5' -56.8 NC_006151.1 + 103311 0.67 0.79163
Target:  5'- cGCGGCGCGAcgccgagcugcgcacGCUGGugcAGGCGGcGCAGc -3'
miRNA:   3'- -UGCUGUGCU---------------CGGCCu--UCUGCCaCGUU- -5'
29497 5' -56.8 NC_006151.1 + 102974 0.67 0.806066
Target:  5'- gACGGCGCGcuGCUGGcgcagcugcugGAGGCGG-GCGAg -3'
miRNA:   3'- -UGCUGUGCu-CGGCC-----------UUCUGCCaCGUU- -5'
29497 5' -56.8 NC_006151.1 + 102509 0.66 0.84356
Target:  5'- cGCGGCGCGGGaccCCGGcggcgucuacgaccAGACGGUGguGg -3'
miRNA:   3'- -UGCUGUGCUC---GGCCu-------------UCUGCCACguU- -5'
29497 5' -56.8 NC_006151.1 + 101690 0.66 0.856296
Target:  5'- uCGugGaCGAGCCguacguGGAgcGGGCGGUGCc- -3'
miRNA:   3'- uGCugU-GCUCGG------CCU--UCUGCCACGuu -5'
29497 5' -56.8 NC_006151.1 + 100920 0.66 0.84356
Target:  5'- gACGACGCGAGCgCGGGcgugccccugcucgcGcaaacGugGGUGCc- -3'
miRNA:   3'- -UGCUGUGCUCG-GCCU---------------U-----CugCCACGuu -5'
29497 5' -56.8 NC_006151.1 + 99395 0.66 0.863991
Target:  5'- gACGACuACGGGcCCGGGcuGGACuacGUGCGc -3'
miRNA:   3'- -UGCUG-UGCUC-GGCCU--UCUGc--CACGUu -5'
29497 5' -56.8 NC_006151.1 + 99194 0.8 0.173284
Target:  5'- gACGcCACGGGCgugUGGGAGGCGGUGCAGg -3'
miRNA:   3'- -UGCuGUGCUCG---GCCUUCUGCCACGUU- -5'
29497 5' -56.8 NC_006151.1 + 98950 0.74 0.432522
Target:  5'- gGCGGCGCGGGCCGuGGacgAGGCGGcGCu- -3'
miRNA:   3'- -UGCUGUGCUCGGC-CU---UCUGCCaCGuu -5'
29497 5' -56.8 NC_006151.1 + 96927 0.68 0.769291
Target:  5'- cCGGgACGGGCCGGGAucGCGG-GCGGg -3'
miRNA:   3'- uGCUgUGCUCGGCCUUc-UGCCaCGUU- -5'
29497 5' -56.8 NC_006151.1 + 96587 0.68 0.750125
Target:  5'- cGCGGCGCGAggcGCCGGgcG-CGG-GCGc -3'
miRNA:   3'- -UGCUGUGCU---CGGCCuuCuGCCaCGUu -5'
29497 5' -56.8 NC_006151.1 + 91744 0.69 0.680234
Target:  5'- cGCGGCgggcgaGCGGGCuCGGGcGGGCGGUGUg- -3'
miRNA:   3'- -UGCUG------UGCUCG-GCCU-UCUGCCACGuu -5'
29497 5' -56.8 NC_006151.1 + 89719 0.66 0.871475
Target:  5'- gGCGGCGCcGGCCGcGGccGCGGUGguGg -3'
miRNA:   3'- -UGCUGUGcUCGGC-CUucUGCCACguU- -5'
29497 5' -56.8 NC_006151.1 + 89488 0.67 0.797089
Target:  5'- cGCGGCgGCGAGCCGGuacgcGCGGgugugGCGc -3'
miRNA:   3'- -UGCUG-UGCUCGGCCuuc--UGCCa----CGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.