miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29497 5' -56.8 NC_006151.1 + 141867 0.66 0.871475
Target:  5'- cGCGcccuCugGuGCCGGAGGGcCGG-GCAu -3'
miRNA:   3'- -UGCu---GugCuCGGCCUUCU-GCCaCGUu -5'
29497 5' -56.8 NC_006151.1 + 140067 0.66 0.871475
Target:  5'- gGCGGCGCGcgugcuCCGcGAGAUGGUGCu- -3'
miRNA:   3'- -UGCUGUGCuc----GGCcUUCUGCCACGuu -5'
29497 5' -56.8 NC_006151.1 + 139742 0.67 0.806066
Target:  5'- gGCGACAgGAGgCGGAucguccGGACGGcggGCc- -3'
miRNA:   3'- -UGCUGUgCUCgGCCU------UCUGCCa--CGuu -5'
29497 5' -56.8 NC_006151.1 + 137143 0.72 0.507693
Target:  5'- cGCGACGCGGcGCCGGA-GAUGGccGCGc -3'
miRNA:   3'- -UGCUGUGCU-CGGCCUuCUGCCa-CGUu -5'
29497 5' -56.8 NC_006151.1 + 135123 0.75 0.364248
Target:  5'- cGCGGgGCGGGCUGGGcggGGACGG-GCAGa -3'
miRNA:   3'- -UGCUgUGCUCGGCCU---UCUGCCaCGUU- -5'
29497 5' -56.8 NC_006151.1 + 135093 0.68 0.740381
Target:  5'- gGCGGCG-GGGCCGGGcGGGCGGcgGUAGc -3'
miRNA:   3'- -UGCUGUgCUCGGCCU-UCUGCCa-CGUU- -5'
29497 5' -56.8 NC_006151.1 + 134807 0.73 0.44157
Target:  5'- gGCGGCcCGcGCCGGAcccGGACGGUGgCGAc -3'
miRNA:   3'- -UGCUGuGCuCGGCCU---UCUGCCAC-GUU- -5'
29497 5' -56.8 NC_006151.1 + 134081 0.67 0.796183
Target:  5'- uGCGA-GCGAGCCcgugaccguggacGGAGGGCGGcUGCu- -3'
miRNA:   3'- -UGCUgUGCUCGG-------------CCUUCUGCC-ACGuu -5'
29497 5' -56.8 NC_006151.1 + 133738 0.66 0.848396
Target:  5'- gGCGA-GCGAGUgGGGucGGGCGcGUGCGGa -3'
miRNA:   3'- -UGCUgUGCUCGgCCU--UCUGC-CACGUU- -5'
29497 5' -56.8 NC_006151.1 + 130860 0.74 0.396591
Target:  5'- gGCGGCGCGGGCgGGAccgcaguGGGCGGcgGCGGu -3'
miRNA:   3'- -UGCUGUGCUCGgCCU-------UCUGCCa-CGUU- -5'
29497 5' -56.8 NC_006151.1 + 130291 0.7 0.639212
Target:  5'- -gGGCGCGcGCCGGccGACGGcGCGGa -3'
miRNA:   3'- ugCUGUGCuCGGCCuuCUGCCaCGUU- -5'
29497 5' -56.8 NC_006151.1 + 127484 0.68 0.749155
Target:  5'- aACGAgcCGCGGaccccgcGCCGGAAGcUGGUGCGc -3'
miRNA:   3'- -UGCU--GUGCU-------CGGCCUUCuGCCACGUu -5'
29497 5' -56.8 NC_006151.1 + 123614 0.7 0.639212
Target:  5'- gGCGAuauaucCGCGAGCUGGugcuGGCGGuUGCAGu -3'
miRNA:   3'- -UGCU------GUGCUCGGCCuu--CUGCC-ACGUU- -5'
29497 5' -56.8 NC_006151.1 + 123152 0.73 0.450724
Target:  5'- aGCGGCGCGAGCUGGAgaAGACccUGCGc -3'
miRNA:   3'- -UGCUGUGCUCGGCCU--UCUGccACGUu -5'
29497 5' -56.8 NC_006151.1 + 122661 0.66 0.871475
Target:  5'- aGCGGCGCGAgcGCCGcGccGA-GGUGCGc -3'
miRNA:   3'- -UGCUGUGCU--CGGC-CuuCUgCCACGUu -5'
29497 5' -56.8 NC_006151.1 + 122426 0.66 0.863991
Target:  5'- gACGcCGcCGAGgcCCGGGAGGCGGagGCGg -3'
miRNA:   3'- -UGCuGU-GCUC--GGCCUUCUGCCa-CGUu -5'
29497 5' -56.8 NC_006151.1 + 122028 0.66 0.870737
Target:  5'- uCGACACGuacggcgGGCgCGuGGAGACGGagcUGCAGu -3'
miRNA:   3'- uGCUGUGC-------UCG-GC-CUUCUGCC---ACGUU- -5'
29497 5' -56.8 NC_006151.1 + 121906 0.66 0.856296
Target:  5'- cGCGuacGCGCGGGCCgaGGggGAcCGcGUGCu- -3'
miRNA:   3'- -UGC---UGUGCUCGG--CCuuCU-GC-CACGuu -5'
29497 5' -56.8 NC_006151.1 + 121410 0.67 0.787962
Target:  5'- uGCGGCGCGGGCgGGGAcgucGCGGgGCu- -3'
miRNA:   3'- -UGCUGUGCUCGgCCUUc---UGCCaCGuu -5'
29497 5' -56.8 NC_006151.1 + 119774 0.66 0.871475
Target:  5'- cCGGCGCGcGCauCGGcGAGACGGUGaCGGa -3'
miRNA:   3'- uGCUGUGCuCG--GCC-UUCUGCCAC-GUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.