Results 1 - 20 of 85 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29497 | 5' | -56.8 | NC_006151.1 | + | 4235 | 0.66 | 0.871475 |
Target: 5'- -gGGCGCGggcAGCCGGA--GCGG-GCAGg -3' miRNA: 3'- ugCUGUGC---UCGGCCUucUGCCaCGUU- -5' |
|||||||
29497 | 5' | -56.8 | NC_006151.1 | + | 4319 | 0.67 | 0.80339 |
Target: 5'- -gGGCACGcGGCCGGGcugcgcggcggcgaAGGCGGcGCGGa -3' miRNA: 3'- ugCUGUGC-UCGGCCU--------------UCUGCCaCGUU- -5' |
|||||||
29497 | 5' | -56.8 | NC_006151.1 | + | 5092 | 0.71 | 0.557378 |
Target: 5'- cGCGGCGgGcGCCGGcgGAGACGGUgGCGg -3' miRNA: 3'- -UGCUGUgCuCGGCC--UUCUGCCA-CGUu -5' |
|||||||
29497 | 5' | -56.8 | NC_006151.1 | + | 5251 | 0.77 | 0.296813 |
Target: 5'- gGCGGCGgGGGcCCGGggGGCGGaggGCGAg -3' miRNA: 3'- -UGCUGUgCUC-GGCCuuCUGCCa--CGUU- -5' |
|||||||
29497 | 5' | -56.8 | NC_006151.1 | + | 9695 | 0.69 | 0.670017 |
Target: 5'- cCGGcCGCGGGugcCCGGGAGACGGgaGCGAa -3' miRNA: 3'- uGCU-GUGCUC---GGCCUUCUGCCa-CGUU- -5' |
|||||||
29497 | 5' | -56.8 | NC_006151.1 | + | 10061 | 0.66 | 0.863991 |
Target: 5'- aGCGGCuccCGAGuCCGGGaaggaaAGGCGG-GCGGa -3' miRNA: 3'- -UGCUGu--GCUC-GGCCU------UCUGCCaCGUU- -5' |
|||||||
29497 | 5' | -56.8 | NC_006151.1 | + | 10200 | 0.72 | 0.527365 |
Target: 5'- cGCGGCGCGGGCggCGGcugcaGAGGCGGcUGCGGa -3' miRNA: 3'- -UGCUGUGCUCG--GCC-----UUCUGCC-ACGUU- -5' |
|||||||
29497 | 5' | -56.8 | NC_006151.1 | + | 14267 | 0.69 | 0.690412 |
Target: 5'- uCGGgGUGGGCCGGGAGugGGcgugGCAAc -3' miRNA: 3'- uGCUgUGCUCGGCCUUCugCCa---CGUU- -5' |
|||||||
29497 | 5' | -56.8 | NC_006151.1 | + | 20090 | 0.68 | 0.73054 |
Target: 5'- aACGuCAucuUGGGCUGGggGACGG-GCGc -3' miRNA: 3'- -UGCuGU---GCUCGGCCuuCUGCCaCGUu -5' |
|||||||
29497 | 5' | -56.8 | NC_006151.1 | + | 20122 | 0.75 | 0.388965 |
Target: 5'- gGCGACG-GGGCUGGggGGCGG-GCGc -3' miRNA: 3'- -UGCUGUgCUCGGCCuuCUGCCaCGUu -5' |
|||||||
29497 | 5' | -56.8 | NC_006151.1 | + | 21386 | 0.73 | 0.44157 |
Target: 5'- -gGGCACGAcgGCCGGcggggcgaaGGGGCGGUGCGg -3' miRNA: 3'- ugCUGUGCU--CGGCC---------UUCUGCCACGUu -5' |
|||||||
29497 | 5' | -56.8 | NC_006151.1 | + | 23889 | 0.67 | 0.823534 |
Target: 5'- aGCGGguuCACGGGCUGGgcGuCGGUcGCGGg -3' miRNA: 3'- -UGCU---GUGCUCGGCCuuCuGCCA-CGUU- -5' |
|||||||
29497 | 5' | -56.8 | NC_006151.1 | + | 27307 | 0.68 | 0.759765 |
Target: 5'- gGCGugGggguCGAGgCGGggGACGGgggGCu- -3' miRNA: 3'- -UGCugU----GCUCgGCCuuCUGCCa--CGuu -5' |
|||||||
29497 | 5' | -56.8 | NC_006151.1 | + | 27488 | 0.66 | 0.863991 |
Target: 5'- uCGGCgggguggugggaACGGGgUGGGAGGgGGUGCGAu -3' miRNA: 3'- uGCUG------------UGCUCgGCCUUCUgCCACGUU- -5' |
|||||||
29497 | 5' | -56.8 | NC_006151.1 | + | 29070 | 0.67 | 0.814884 |
Target: 5'- gGCGcCGCGGGCCccGAGACGGccgcgGCGAc -3' miRNA: 3'- -UGCuGUGCUCGGccUUCUGCCa----CGUU- -5' |
|||||||
29497 | 5' | -56.8 | NC_006151.1 | + | 30397 | 0.68 | 0.727571 |
Target: 5'- cGCGACGCGAGUCgacggGGAgaggaaggaggggaGGACGGaggGCGAg -3' miRNA: 3'- -UGCUGUGCUCGG-----CCU--------------UCUGCCa--CGUU- -5' |
|||||||
29497 | 5' | -56.8 | NC_006151.1 | + | 31388 | 0.7 | 0.639212 |
Target: 5'- cCGGCACcaAGCCGGggGGcCGGgGCGAg -3' miRNA: 3'- uGCUGUGc-UCGGCCuuCU-GCCaCGUU- -5' |
|||||||
29497 | 5' | -56.8 | NC_006151.1 | + | 33126 | 0.67 | 0.778693 |
Target: 5'- cGCGugcCGCGGGCCGaGugucGGGCGaGUGCGAg -3' miRNA: 3'- -UGCu--GUGCUCGGC-Cu---UCUGC-CACGUU- -5' |
|||||||
29497 | 5' | -56.8 | NC_006151.1 | + | 34293 | 1.05 | 0.003678 |
Target: 5'- gACGACACGAGCCGGAAGACGGUGCAAc -3' miRNA: 3'- -UGCUGUGCUCGGCCUUCUGCCACGUU- -5' |
|||||||
29497 | 5' | -56.8 | NC_006151.1 | + | 42682 | 0.68 | 0.769291 |
Target: 5'- uGCG-UGCGAGCCGGA-GACGGaGaCAAu -3' miRNA: 3'- -UGCuGUGCUCGGCCUuCUGCCaC-GUU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home