Results 1 - 20 of 85 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29497 | 5' | -56.8 | NC_006151.1 | + | 34293 | 1.05 | 0.003678 |
Target: 5'- gACGACACGAGCCGGAAGACGGUGCAAc -3' miRNA: 3'- -UGCUGUGCUCGGCCUUCUGCCACGUU- -5' |
|||||||
29497 | 5' | -56.8 | NC_006151.1 | + | 99194 | 0.8 | 0.173284 |
Target: 5'- gACGcCACGGGCgugUGGGAGGCGGUGCAGg -3' miRNA: 3'- -UGCuGUGCUCG---GCCUUCUGCCACGUU- -5' |
|||||||
29497 | 5' | -56.8 | NC_006151.1 | + | 5251 | 0.77 | 0.296813 |
Target: 5'- gGCGGCGgGGGcCCGGggGGCGGaggGCGAg -3' miRNA: 3'- -UGCUGUgCUC-GGCCuuCUGCCa--CGUU- -5' |
|||||||
29497 | 5' | -56.8 | NC_006151.1 | + | 135123 | 0.75 | 0.364248 |
Target: 5'- cGCGGgGCGGGCUGGGcggGGACGG-GCAGa -3' miRNA: 3'- -UGCUgUGCUCGGCCU---UCUGCCaCGUU- -5' |
|||||||
29497 | 5' | -56.8 | NC_006151.1 | + | 20122 | 0.75 | 0.388965 |
Target: 5'- gGCGACG-GGGCUGGggGGCGG-GCGc -3' miRNA: 3'- -UGCUGUgCUCGGCCuuCUGCCaCGUu -5' |
|||||||
29497 | 5' | -56.8 | NC_006151.1 | + | 130860 | 0.74 | 0.396591 |
Target: 5'- gGCGGCGCGGGCgGGAccgcaguGGGCGGcgGCGGu -3' miRNA: 3'- -UGCUGUGCUCGgCCU-------UCUGCCa-CGUU- -5' |
|||||||
29497 | 5' | -56.8 | NC_006151.1 | + | 98950 | 0.74 | 0.432522 |
Target: 5'- gGCGGCGCGGGCCGuGGacgAGGCGGcGCu- -3' miRNA: 3'- -UGCUGUGCUCGGC-CU---UCUGCCaCGuu -5' |
|||||||
29497 | 5' | -56.8 | NC_006151.1 | + | 21386 | 0.73 | 0.44157 |
Target: 5'- -gGGCACGAcgGCCGGcggggcgaaGGGGCGGUGCGg -3' miRNA: 3'- ugCUGUGCU--CGGCC---------UUCUGCCACGUu -5' |
|||||||
29497 | 5' | -56.8 | NC_006151.1 | + | 134807 | 0.73 | 0.44157 |
Target: 5'- gGCGGCcCGcGCCGGAcccGGACGGUGgCGAc -3' miRNA: 3'- -UGCUGuGCuCGGCCU---UCUGCCAC-GUU- -5' |
|||||||
29497 | 5' | -56.8 | NC_006151.1 | + | 123152 | 0.73 | 0.450724 |
Target: 5'- aGCGGCGCGAGCUGGAgaAGACccUGCGc -3' miRNA: 3'- -UGCUGUGCUCGGCCU--UCUGccACGUu -5' |
|||||||
29497 | 5' | -56.8 | NC_006151.1 | + | 78612 | 0.73 | 0.459981 |
Target: 5'- aGCGACGCGGagacgaacgcGCCGGAcgccGACGcGUGCGAg -3' miRNA: 3'- -UGCUGUGCU----------CGGCCUu---CUGC-CACGUU- -5' |
|||||||
29497 | 5' | -56.8 | NC_006151.1 | + | 46634 | 0.73 | 0.488339 |
Target: 5'- uGCGACGCG-GCCGGAcGGGCGGacagGCc- -3' miRNA: 3'- -UGCUGUGCuCGGCCU-UCUGCCa---CGuu -5' |
|||||||
29497 | 5' | -56.8 | NC_006151.1 | + | 89169 | 0.72 | 0.497974 |
Target: 5'- gGCGAgGCGGGCgCGGggGuCGGggGCGGa -3' miRNA: 3'- -UGCUgUGCUCG-GCCuuCuGCCa-CGUU- -5' |
|||||||
29497 | 5' | -56.8 | NC_006151.1 | + | 112033 | 0.72 | 0.497974 |
Target: 5'- gGCGggaGCugGGGCCGGcGGGCGGgcgGCGg -3' miRNA: 3'- -UGC---UGugCUCGGCCuUCUGCCa--CGUu -5' |
|||||||
29497 | 5' | -56.8 | NC_006151.1 | + | 137143 | 0.72 | 0.507693 |
Target: 5'- cGCGACGCGGcGCCGGA-GAUGGccGCGc -3' miRNA: 3'- -UGCUGUGCU-CGGCCUuCUGCCa-CGUu -5' |
|||||||
29497 | 5' | -56.8 | NC_006151.1 | + | 82757 | 0.72 | 0.517491 |
Target: 5'- gACGACGCGGGCaUGGu-GACGGgcacgGCAAa -3' miRNA: 3'- -UGCUGUGCUCG-GCCuuCUGCCa----CGUU- -5' |
|||||||
29497 | 5' | -56.8 | NC_006151.1 | + | 10200 | 0.72 | 0.527365 |
Target: 5'- cGCGGCGCGGGCggCGGcugcaGAGGCGGcUGCGGa -3' miRNA: 3'- -UGCUGUGCUCG--GCC-----UUCUGCC-ACGUU- -5' |
|||||||
29497 | 5' | -56.8 | NC_006151.1 | + | 5092 | 0.71 | 0.557378 |
Target: 5'- cGCGGCGgGcGCCGGcgGAGACGGUgGCGg -3' miRNA: 3'- -UGCUGUgCuCGGCC--UUCUGCCA-CGUu -5' |
|||||||
29497 | 5' | -56.8 | NC_006151.1 | + | 103771 | 0.71 | 0.598095 |
Target: 5'- gGCGcuGCGCGAGUCGGAGcgcuGGCGGcgcUGCAGg -3' miRNA: 3'- -UGC--UGUGCUCGGCCUU----CUGCC---ACGUU- -5' |
|||||||
29497 | 5' | -56.8 | NC_006151.1 | + | 110738 | 0.7 | 0.618633 |
Target: 5'- cACGcaACACgcuaGAGUCGaGAGGAUGGUGCAAc -3' miRNA: 3'- -UGC--UGUG----CUCGGC-CUUCUGCCACGUU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home