miRNA display CGI


Results 21 - 40 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29498 3' -68.8 NC_006151.1 + 66520 0.66 0.406589
Target:  5'- gCCgGGCUCGCGCGcgccgcgcucuucGGGGGCgCgCgcggCCg -3'
miRNA:   3'- -GGgCUGGGCGCGC-------------CCCCCGgGgGa---GG- -5'
29498 3' -68.8 NC_006151.1 + 83357 0.66 0.402694
Target:  5'- cCCCGGCgCGCGCGcGGGcgcgcaggcgccgcaGGUgCUCgUCCg -3'
miRNA:   3'- -GGGCUGgGCGCGC-CCC---------------CCGgGGG-AGG- -5'
29498 3' -68.8 NC_006151.1 + 84534 0.66 0.399595
Target:  5'- cCCCGuuCCC-CGUGGGcuucuGGGCCCgC-CCg -3'
miRNA:   3'- -GGGCu-GGGcGCGCCC-----CCCGGGgGaGG- -5'
29498 3' -68.8 NC_006151.1 + 125187 0.66 0.399595
Target:  5'- cCUCGGCCUcgccgGCGuCGuGGGccccgcGGCCCCCgcggCCg -3'
miRNA:   3'- -GGGCUGGG-----CGC-GC-CCC------CCGGGGGa---GG- -5'
29498 3' -68.8 NC_006151.1 + 11451 0.66 0.398823
Target:  5'- uCCCG-CCCGCGUGcccccGGGGCCaucggcuggaacaCCCUgagCCu -3'
miRNA:   3'- -GGGCuGGGCGCGCc----CCCCGG-------------GGGA---GG- -5'
29498 3' -68.8 NC_006151.1 + 18302 0.66 0.391915
Target:  5'- gUCGAagCCGgaGCGGGGcGCCUCCUCg -3'
miRNA:   3'- gGGCUg-GGCg-CGCCCCcCGGGGGAGg -5'
29498 3' -68.8 NC_006151.1 + 3627 0.66 0.391915
Target:  5'- gCCGuCCC-CGCGGaGGGCcgcgccggagagCCCCUCg -3'
miRNA:   3'- gGGCuGGGcGCGCCcCCCG------------GGGGAGg -5'
29498 3' -68.8 NC_006151.1 + 33969 0.66 0.391915
Target:  5'- aCgCGgcGCCCGCGCGGGGacaCUCUUUCCc -3'
miRNA:   3'- -GgGC--UGGGCGCGCCCCcc-GGGGGAGG- -5'
29498 3' -68.8 NC_006151.1 + 5998 0.66 0.391915
Target:  5'- gCCCGAccgggggaCCCG-GCGGccGGGGacccgggcucguCCUCCUCCu -3'
miRNA:   3'- -GGGCU--------GGGCgCGCC--CCCC------------GGGGGAGG- -5'
29498 3' -68.8 NC_006151.1 + 79083 0.66 0.391915
Target:  5'- aCCGccCCCGCGCGcGcGaGcGaGCgCCCCUCCg -3'
miRNA:   3'- gGGCu-GGGCGCGC-C-C-C-C-CG-GGGGAGG- -5'
29498 3' -68.8 NC_006151.1 + 58076 0.66 0.398823
Target:  5'- gUCCGcGCCCuCGCGGGcgagcucGGGCCCCa--- -3'
miRNA:   3'- -GGGC-UGGGcGCGCCC-------CCCGGGGgagg -5'
29498 3' -68.8 NC_006151.1 + 54145 0.67 0.361447
Target:  5'- cCCCGGCggcgCCGCGgaggaGGcuaauaaccuguuGGGcGCCCCCUCg -3'
miRNA:   3'- -GGGCUG----GGCGCg----CC-------------CCC-CGGGGGAGg -5'
29498 3' -68.8 NC_006151.1 + 5871 0.67 0.36217
Target:  5'- gCCCgGGgCCGC-C-GGGGGCCCCggCCu -3'
miRNA:   3'- -GGG-CUgGGCGcGcCCCCCGGGGgaGG- -5'
29498 3' -68.8 NC_006151.1 + 37258 0.67 0.36217
Target:  5'- gCCCGGCCCccGCGCaGGaaGCgCCgCUCCa -3'
miRNA:   3'- -GGGCUGGG--CGCGcCCccCGgGG-GAGG- -5'
29498 3' -68.8 NC_006151.1 + 48531 0.67 0.36217
Target:  5'- gCCGcCgCUGCGCuauaauGGaGGGCCCCCcgCCg -3'
miRNA:   3'- gGGCuG-GGCGCGc-----CC-CCCGGGGGa-GG- -5'
29498 3' -68.8 NC_006151.1 + 105448 0.67 0.36217
Target:  5'- aCUCGGCgCGCGCc-GGGGCCCugggcgacuuCUUCCg -3'
miRNA:   3'- -GGGCUGgGCGCGccCCCCGGG----------GGAGG- -5'
29498 3' -68.8 NC_006151.1 + 72028 0.67 0.36217
Target:  5'- -gCGcCCCGCGCGGGc-GCCCCg-CCg -3'
miRNA:   3'- ggGCuGGGCGCGCCCccCGGGGgaGG- -5'
29498 3' -68.8 NC_006151.1 + 112090 0.67 0.36217
Target:  5'- cCCCGGgUCGgGCGGcggacuuuauaGGGcGCCCagCUCCa -3'
miRNA:   3'- -GGGCUgGGCgCGCC-----------CCC-CGGGg-GAGG- -5'
29498 3' -68.8 NC_006151.1 + 49622 0.67 0.365073
Target:  5'- gCgGugCUGCGCgaguggGGGuGGGCCguggaggaggucgagCCCUCCg -3'
miRNA:   3'- gGgCugGGCGCG------CCC-CCCGG---------------GGGAGG- -5'
29498 3' -68.8 NC_006151.1 + 101696 0.67 0.361447
Target:  5'- -aCGAgCCGUacguggaGCGGGcGGUgCCCUCCg -3'
miRNA:   3'- ggGCUgGGCG-------CGCCCcCCGgGGGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.