miRNA display CGI


Results 21 - 40 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29498 3' -68.8 NC_006151.1 + 50830 0.73 0.134521
Target:  5'- cCUCGGCCCGCGCcGccguccccucGGcGGCCgCCCUCCc -3'
miRNA:   3'- -GGGCUGGGCGCGcC----------CC-CCGG-GGGAGG- -5'
29498 3' -68.8 NC_006151.1 + 57509 0.73 0.13771
Target:  5'- gCUCGGCCgCG-GCGGcGGcGGCCgCCUCCg -3'
miRNA:   3'- -GGGCUGG-GCgCGCC-CC-CCGGgGGAGG- -5'
29498 3' -68.8 NC_006151.1 + 33882 0.73 0.13771
Target:  5'- uCCCGGaccccCCCGgGgGcGGGGGCCUcgcgCCUCCg -3'
miRNA:   3'- -GGGCU-----GGGCgCgC-CCCCCGGG----GGAGG- -5'
29498 3' -68.8 NC_006151.1 + 37024 0.73 0.140969
Target:  5'- gCCGcCgCCGCGCGGcGcucGGCCUCCUCCu -3'
miRNA:   3'- gGGCuG-GGCGCGCC-Cc--CCGGGGGAGG- -5'
29498 3' -68.8 NC_006151.1 + 37183 0.73 0.144298
Target:  5'- gCCgCGGCCC-CGCGGcccucGGCCUCCUCCg -3'
miRNA:   3'- -GG-GCUGGGcGCGCCcc---CCGGGGGAGG- -5'
29498 3' -68.8 NC_006151.1 + 81295 0.72 0.147699
Target:  5'- gCgCGGCgCGCGCGacGGGGUCCuCCUCCu -3'
miRNA:   3'- -GgGCUGgGCGCGCc-CCCCGGG-GGAGG- -5'
29498 3' -68.8 NC_006151.1 + 3560 0.72 0.147699
Target:  5'- gCCCGAgUCCGagggaGCGGcgcuugcgccGGGGCCCCCggUCCu -3'
miRNA:   3'- -GGGCU-GGGCg----CGCC----------CCCCGGGGG--AGG- -5'
29498 3' -68.8 NC_006151.1 + 90485 0.72 0.151172
Target:  5'- -aUGGCUCGC-CGGGGcGGCaacCCCCUCCg -3'
miRNA:   3'- ggGCUGGGCGcGCCCC-CCG---GGGGAGG- -5'
29498 3' -68.8 NC_006151.1 + 125250 0.72 0.15472
Target:  5'- cCCCGGCCCG-GCGGGGacGCCCgagCCgCCg -3'
miRNA:   3'- -GGGCUGGGCgCGCCCCc-CGGG---GGaGG- -5'
29498 3' -68.8 NC_006151.1 + 8250 0.72 0.158343
Target:  5'- gCCgGGCCgGCGCGccGGGaCgCCCCUCCg -3'
miRNA:   3'- -GGgCUGGgCGCGCccCCC-G-GGGGAGG- -5'
29498 3' -68.8 NC_006151.1 + 135031 0.72 0.169285
Target:  5'- gCgGGgCCGCGUcguccucGGGGcGGuCCCCCUCCu -3'
miRNA:   3'- gGgCUgGGCGCG-------CCCC-CC-GGGGGAGG- -5'
29498 3' -68.8 NC_006151.1 + 40067 0.72 0.169675
Target:  5'- aCCGGCCCGCGgGGGccucGGGCgCCggggCCg -3'
miRNA:   3'- gGGCUGGGCGCgCCC----CCCGgGGga--GG- -5'
29498 3' -68.8 NC_006151.1 + 55459 0.71 0.173611
Target:  5'- gCCGGcCCCGC-CGGGGGGCgcgcgCCCggcgCCg -3'
miRNA:   3'- gGGCU-GGGCGcGCCCCCCGg----GGGa---GG- -5'
29498 3' -68.8 NC_006151.1 + 36360 0.71 0.173611
Target:  5'- cCCCGgcagcACUCGCaGCGGcagaggccGGGGCCCCCggcggCCc -3'
miRNA:   3'- -GGGC-----UGGGCG-CGCC--------CCCCGGGGGa----GG- -5'
29498 3' -68.8 NC_006151.1 + 10655 0.71 0.175207
Target:  5'- cCCCG-CCCagGCgGCGGGGGagcgcggagcgcgccGCCCCC-CCg -3'
miRNA:   3'- -GGGCuGGG--CG-CGCCCCC---------------CGGGGGaGG- -5'
29498 3' -68.8 NC_006151.1 + 13981 0.71 0.177628
Target:  5'- gCCgGGCCCGCGUccccGGGGcccacgugugaGGCCCCggCCa -3'
miRNA:   3'- -GGgCUGGGCGCG----CCCC-----------CCGGGGgaGG- -5'
29498 3' -68.8 NC_006151.1 + 137425 0.71 0.18591
Target:  5'- gCCG--CCGcCGCGGGGuccgccuccgcGGCCUCCUCCg -3'
miRNA:   3'- gGGCugGGC-GCGCCCC-----------CCGGGGGAGG- -5'
29498 3' -68.8 NC_006151.1 + 109121 0.71 0.190177
Target:  5'- gCCGGCCCGCGCccgccGGccGGGCa-CCUCCg -3'
miRNA:   3'- gGGCUGGGCGCGc----CC--CCCGggGGAGG- -5'
29498 3' -68.8 NC_006151.1 + 107356 0.71 0.190177
Target:  5'- aCCCGGCCCGCGgccccgaucccCGGGcuGCCCCC-Cg -3'
miRNA:   3'- -GGGCUGGGCGC-----------GCCCccCGGGGGaGg -5'
29498 3' -68.8 NC_006151.1 + 720 0.71 0.190177
Target:  5'- aCCGGgggUCCGCGgGcGGGGGCuUCCgCUCCg -3'
miRNA:   3'- gGGCU---GGGCGCgC-CCCCCG-GGG-GAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.