Results 21 - 40 of 161 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29498 | 3' | -68.8 | NC_006151.1 | + | 114314 | 0.66 | 0.384331 |
Target: 5'- -aCGugCUGCGCGacGGGGGCCUgCg-- -3' miRNA: 3'- ggGCugGGCGCGC--CCCCCGGGgGagg -5' |
|||||||
29498 | 3' | -68.8 | NC_006151.1 | + | 130925 | 0.66 | 0.383578 |
Target: 5'- gCCgGGCCCGCgggggcgggggcgGCGGGGGGUCgCg--- -3' miRNA: 3'- -GGgCUGGGCG-------------CGCCCCCCGGgGgagg -5' |
|||||||
29498 | 3' | -68.8 | NC_006151.1 | + | 6850 | 0.66 | 0.376845 |
Target: 5'- gCCCGGCCCcCGCGGcGGccaucuuGCCCCaUCg -3' miRNA: 3'- -GGGCUGGGcGCGCC-CCc------CGGGGgAGg -5' |
|||||||
29498 | 3' | -68.8 | NC_006151.1 | + | 37330 | 0.66 | 0.375359 |
Target: 5'- aCCGAcgggccgcugcucacCCCGCuCGGGGaGCCcuggcccggcuccgaCCCUCCg -3' miRNA: 3'- gGGCU---------------GGGCGcGCCCCcCGG---------------GGGAGG- -5' |
|||||||
29498 | 3' | -68.8 | NC_006151.1 | + | 4789 | 0.66 | 0.369458 |
Target: 5'- gCCCGGCCgCgGCGCGGuagcGGGCCgCggCCu -3' miRNA: 3'- -GGGCUGG-G-CGCGCCc---CCCGGgGgaGG- -5' |
|||||||
29498 | 3' | -68.8 | NC_006151.1 | + | 5370 | 0.66 | 0.369458 |
Target: 5'- gCCGGCggggCUGUcucuGCGGGGGcGCCCCg-CCg -3' miRNA: 3'- gGGCUG----GGCG----CGCCCCC-CGGGGgaGG- -5' |
|||||||
29498 | 3' | -68.8 | NC_006151.1 | + | 50395 | 0.66 | 0.369458 |
Target: 5'- cCCCGcgguCCuCGCGCGGcccccccgacgaGGaGGCgCCCCUgCg -3' miRNA: 3'- -GGGCu---GG-GCGCGCC------------CC-CCG-GGGGAgG- -5' |
|||||||
29498 | 3' | -68.8 | NC_006151.1 | + | 106790 | 0.66 | 0.369458 |
Target: 5'- aCCUGGCCgCG-GCGGcggugcucgucGGGGCCCCgCUg- -3' miRNA: 3'- -GGGCUGG-GCgCGCC-----------CCCCGGGG-GAgg -5' |
|||||||
29498 | 3' | -68.8 | NC_006151.1 | + | 136819 | 0.66 | 0.369458 |
Target: 5'- gCCGACgcgCCGCGCGGGcucugcgacGcGGCCgCCggCCu -3' miRNA: 3'- gGGCUG---GGCGCGCCC---------C-CCGGgGGa-GG- -5' |
|||||||
29498 | 3' | -68.8 | NC_006151.1 | + | 78528 | 0.66 | 0.369458 |
Target: 5'- gCgGACCCG-GCGGGGG-CCUCg-CCg -3' miRNA: 3'- gGgCUGGGCgCGCCCCCcGGGGgaGG- -5' |
|||||||
29498 | 3' | -68.8 | NC_006151.1 | + | 101091 | 0.66 | 0.367261 |
Target: 5'- cCCCGACCUGgGgccCGGGucGGGCgucucgugccugcgCUCCUCCc -3' miRNA: 3'- -GGGCUGGGCgC---GCCC--CCCG--------------GGGGAGG- -5' |
|||||||
29498 | 3' | -68.8 | NC_006151.1 | + | 105545 | 0.67 | 0.365073 |
Target: 5'- gCCCGAgcugcggcacgacgcCCUGCGCGcgcuGGcGGCCgCCUUCg -3' miRNA: 3'- -GGGCU---------------GGGCGCGCc---CC-CCGGgGGAGG- -5' |
|||||||
29498 | 3' | -68.8 | NC_006151.1 | + | 49622 | 0.67 | 0.365073 |
Target: 5'- gCgGugCUGCGCgaguggGGGuGGGCCguggaggaggucgagCCCUCCg -3' miRNA: 3'- gGgCugGGCGCG------CCC-CCCGG---------------GGGAGG- -5' |
|||||||
29498 | 3' | -68.8 | NC_006151.1 | + | 5871 | 0.67 | 0.36217 |
Target: 5'- gCCCgGGgCCGC-C-GGGGGCCCCggCCu -3' miRNA: 3'- -GGG-CUgGGCGcGcCCCCCGGGGgaGG- -5' |
|||||||
29498 | 3' | -68.8 | NC_006151.1 | + | 37258 | 0.67 | 0.36217 |
Target: 5'- gCCCGGCCCccGCGCaGGaaGCgCCgCUCCa -3' miRNA: 3'- -GGGCUGGG--CGCGcCCccCGgGG-GAGG- -5' |
|||||||
29498 | 3' | -68.8 | NC_006151.1 | + | 48531 | 0.67 | 0.36217 |
Target: 5'- gCCGcCgCUGCGCuauaauGGaGGGCCCCCcgCCg -3' miRNA: 3'- gGGCuG-GGCGCGc-----CC-CCCGGGGGa-GG- -5' |
|||||||
29498 | 3' | -68.8 | NC_006151.1 | + | 105448 | 0.67 | 0.36217 |
Target: 5'- aCUCGGCgCGCGCc-GGGGCCCugggcgacuuCUUCCg -3' miRNA: 3'- -GGGCUGgGCGCGccCCCCGGG----------GGAGG- -5' |
|||||||
29498 | 3' | -68.8 | NC_006151.1 | + | 72028 | 0.67 | 0.36217 |
Target: 5'- -gCGcCCCGCGCGGGc-GCCCCg-CCg -3' miRNA: 3'- ggGCuGGGCGCGCCCccCGGGGgaGG- -5' |
|||||||
29498 | 3' | -68.8 | NC_006151.1 | + | 112090 | 0.67 | 0.36217 |
Target: 5'- cCCCGGgUCGgGCGGcggacuuuauaGGGcGCCCagCUCCa -3' miRNA: 3'- -GGGCUgGGCgCGCC-----------CCC-CGGGg-GAGG- -5' |
|||||||
29498 | 3' | -68.8 | NC_006151.1 | + | 101696 | 0.67 | 0.361447 |
Target: 5'- -aCGAgCCGUacguggaGCGGGcGGUgCCCUCCg -3' miRNA: 3'- ggGCUgGGCG-------CGCCCcCCGgGGGAGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home