miRNA display CGI


Results 21 - 40 of 227 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29503 5' -63.8 NC_006151.1 + 3245 0.76 0.148216
Target:  5'- cGGCgCGGCGGcGGAGcGGGGCGCcGCGGc -3'
miRNA:   3'- aCUG-GCCGCC-CCUC-UCCUGCG-CGCCc -5'
29503 5' -63.8 NC_006151.1 + 135100 0.76 0.151829
Target:  5'- gGGCCgGGCGGGcGGcGGuaGCGCGCGGGg -3'
miRNA:   3'- aCUGG-CCGCCCcUCuCC--UGCGCGCCC- -5'
29503 5' -63.8 NC_006151.1 + 30247 0.76 0.155149
Target:  5'- -cGCCGGCGGGaGAGAcgacGGGCGCcacagacagcggcGCGGGg -3'
miRNA:   3'- acUGGCCGCCC-CUCU----CCUGCG-------------CGCCC- -5'
29503 5' -63.8 NC_006151.1 + 22270 0.76 0.155522
Target:  5'- -cGCgGGCGGGGGGaAGGuCgGCGCGGGc -3'
miRNA:   3'- acUGgCCGCCCCUC-UCCuG-CGCGCCC- -5'
29503 5' -63.8 NC_006151.1 + 20124 0.76 0.155522
Target:  5'- cGACgGGgcUGGGGGGcGGGCGCcGCGGGg -3'
miRNA:   3'- aCUGgCC--GCCCCUCuCCUGCG-CGCCC- -5'
29503 5' -63.8 NC_006151.1 + 121662 0.76 0.155522
Target:  5'- gGGCgGGCGGaGGGGGGGAgCGaGCGGGc -3'
miRNA:   3'- aCUGgCCGCC-CCUCUCCU-GCgCGCCC- -5'
29503 5' -63.8 NC_006151.1 + 32079 0.76 0.159296
Target:  5'- cGACCGGCGaacgcaGaGAGGGGACGCG-GGGa -3'
miRNA:   3'- aCUGGCCGCc-----C-CUCUCCUGCGCgCCC- -5'
29503 5' -63.8 NC_006151.1 + 96715 0.76 0.163153
Target:  5'- gGGgCGGCGGcGGAcGAGGAgGCgGCGGGc -3'
miRNA:   3'- aCUgGCCGCC-CCU-CUCCUgCG-CGCCC- -5'
29503 5' -63.8 NC_006151.1 + 9620 0.75 0.165902
Target:  5'- gGGCCGGCGgcgaggggggaagcGGGAGGGaGAgGCGCGGc -3'
miRNA:   3'- aCUGGCCGC--------------CCCUCUC-CUgCGCGCCc -5'
29503 5' -63.8 NC_006151.1 + 111343 0.75 0.167094
Target:  5'- aUGA-CGGuCGGGcGGAuGGGCGCGCGGGg -3'
miRNA:   3'- -ACUgGCC-GCCCcUCU-CCUGCGCGCCC- -5'
29503 5' -63.8 NC_006151.1 + 5247 0.75 0.171119
Target:  5'- cGGCggCGGCGGGGgcccggggggcGGAGGGCGaGCGGGc -3'
miRNA:   3'- aCUG--GCCGCCCC-----------UCUCCUGCgCGCCC- -5'
29503 5' -63.8 NC_006151.1 + 8612 0.75 0.175231
Target:  5'- gGGCCGGUGcGGGuguGAGGGuccUGUGCGGGu -3'
miRNA:   3'- aCUGGCCGC-CCCu--CUCCU---GCGCGCCC- -5'
29503 5' -63.8 NC_006151.1 + 76681 0.75 0.179431
Target:  5'- -cGCUGGggagcaGGGGGGAGaGugGCGCGGGc -3'
miRNA:   3'- acUGGCCg-----CCCCUCUC-CugCGCGCCC- -5'
29503 5' -63.8 NC_006151.1 + 32580 0.75 0.188099
Target:  5'- cGGCCgGGCGGaGGgggaagcgggaAGGGGAaGCGCGGGg -3'
miRNA:   3'- aCUGG-CCGCC-CC-----------UCUCCUgCGCGCCC- -5'
29503 5' -63.8 NC_006151.1 + 87879 0.74 0.19257
Target:  5'- cGAC--GUGGGGGGGGaACGCGCGGGg -3'
miRNA:   3'- aCUGgcCGCCCCUCUCcUGCGCGCCC- -5'
29503 5' -63.8 NC_006151.1 + 80252 0.74 0.201791
Target:  5'- aGGgCGGUGGGaGAGAGGGCGaCGaGGGu -3'
miRNA:   3'- aCUgGCCGCCC-CUCUCCUGC-GCgCCC- -5'
29503 5' -63.8 NC_006151.1 + 29334 0.74 0.201791
Target:  5'- -cACCGGCGGGaGAGAGGGgGgG-GGGa -3'
miRNA:   3'- acUGGCCGCCC-CUCUCCUgCgCgCCC- -5'
29503 5' -63.8 NC_006151.1 + 73035 0.74 0.201791
Target:  5'- gGAUUGGCGGuGGcgcgguGGGGGUGCGCGGGg -3'
miRNA:   3'- aCUGGCCGCC-CCu-----CUCCUGCGCGCCC- -5'
29503 5' -63.8 NC_006151.1 + 93652 0.74 0.206544
Target:  5'- aUGGCCGGCaGGuccagcaGGAGGcuguCGCGCGGGg -3'
miRNA:   3'- -ACUGGCCGcCCc------UCUCCu---GCGCGCCC- -5'
29503 5' -63.8 NC_006151.1 + 45588 0.74 0.211394
Target:  5'- cGGCCcgagggGGCGGGGGGAgccccgacgGGGCGgGCGGa -3'
miRNA:   3'- aCUGG------CCGCCCCUCU---------CCUGCgCGCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.