Results 21 - 40 of 227 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29503 | 5' | -63.8 | NC_006151.1 | + | 7726 | 0.68 | 0.453458 |
Target: 5'- gGACCGGCGaccggacccgaaccGGGA-AGcGACGCcgggGCGGGa -3' miRNA: 3'- aCUGGCCGC--------------CCCUcUC-CUGCG----CGCCC- -5' |
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29503 | 5' | -63.8 | NC_006151.1 | + | 8003 | 0.71 | 0.309581 |
Target: 5'- gGGCgGGCGG-GAGGGGGCGCGagacCGGc -3' miRNA: 3'- aCUGgCCGCCcCUCUCCUGCGC----GCCc -5' |
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29503 | 5' | -63.8 | NC_006151.1 | + | 8085 | 0.69 | 0.430476 |
Target: 5'- gGGCgUGGCGGGGcguggcagaGGGGGAgGgGgGGGg -3' miRNA: 3'- aCUG-GCCGCCCC---------UCUCCUgCgCgCCC- -5' |
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29503 | 5' | -63.8 | NC_006151.1 | + | 8137 | 0.71 | 0.302946 |
Target: 5'- cGcCCGGUGGGGGGGcGGGUGCaaagggGCGGGg -3' miRNA: 3'- aCuGGCCGCCCCUCU-CCUGCG------CGCCC- -5' |
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29503 | 5' | -63.8 | NC_006151.1 | + | 8179 | 0.66 | 0.565428 |
Target: 5'- gGACCucgGGCcGGGAccccGGGGGCGCucCGGGa -3' miRNA: 3'- aCUGG---CCGcCCCU----CUCCUGCGc-GCCC- -5' |
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29503 | 5' | -63.8 | NC_006151.1 | + | 8237 | 0.79 | 0.088246 |
Target: 5'- --cCCGGCGGGGAGGGccgggccGGCGCGcCGGGa -3' miRNA: 3'- acuGGCCGCCCCUCUC-------CUGCGC-GCCC- -5' |
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29503 | 5' | -63.8 | NC_006151.1 | + | 8383 | 0.66 | 0.57492 |
Target: 5'- --cCCGGgGGGGuccGGGAUGgGgGGGg -3' miRNA: 3'- acuGGCCgCCCCuc-UCCUGCgCgCCC- -5' |
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29503 | 5' | -63.8 | NC_006151.1 | + | 8495 | 0.76 | 0.146086 |
Target: 5'- gGGCgGGCGGGGAGGGuGucgucugugugucugUGCGCGGGg -3' miRNA: 3'- aCUGgCCGCCCCUCUCcU---------------GCGCGCCC- -5' |
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29503 | 5' | -63.8 | NC_006151.1 | + | 8612 | 0.75 | 0.175231 |
Target: 5'- gGGCCGGUGcGGGuguGAGGGuccUGUGCGGGu -3' miRNA: 3'- aCUGGCCGC-CCCu--CUCCU---GCGCGCCC- -5' |
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29503 | 5' | -63.8 | NC_006151.1 | + | 9321 | 0.66 | 0.603589 |
Target: 5'- cGGCaccacaGGCGGGaGcGGGGuCGCuCGGGg -3' miRNA: 3'- aCUGg-----CCGCCC-CuCUCCuGCGcGCCC- -5' |
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29503 | 5' | -63.8 | NC_006151.1 | + | 9370 | 0.72 | 0.259564 |
Target: 5'- cGACaGGCGacaGGAGGGGGCcccccGCGCGGGu -3' miRNA: 3'- aCUGgCCGCc--CCUCUCCUG-----CGCGCCC- -5' |
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29503 | 5' | -63.8 | NC_006151.1 | + | 9491 | 0.79 | 0.092989 |
Target: 5'- cGGCCgcGGCGuGGGAGAgcgGGGCGUGUGGGg -3' miRNA: 3'- aCUGG--CCGC-CCCUCU---CCUGCGCGCCC- -5' |
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29503 | 5' | -63.8 | NC_006151.1 | + | 9620 | 0.75 | 0.165902 |
Target: 5'- gGGCCGGCGgcgaggggggaagcGGGAGGGaGAgGCGCGGc -3' miRNA: 3'- aCUGGCCGC--------------CCCUCUC-CUgCGCGCCc -5' |
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29503 | 5' | -63.8 | NC_006151.1 | + | 10082 | 0.68 | 0.482426 |
Target: 5'- gGAaaGGCGGGcGGAGGAaG-GCGGGu -3' miRNA: 3'- aCUggCCGCCCcUCUCCUgCgCGCCC- -5' |
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29503 | 5' | -63.8 | NC_006151.1 | + | 10354 | 0.66 | 0.564481 |
Target: 5'- gGACgCGGgaGGGGAGGGGAgGgaggggaggggguCGgGGGg -3' miRNA: 3'- aCUG-GCCg-CCCCUCUCCUgC-------------GCgCCC- -5' |
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29503 | 5' | -63.8 | NC_006151.1 | + | 10399 | 0.7 | 0.366612 |
Target: 5'- gGAggGGgGGGGAGAGcgggguGACGCcGCGGGu -3' miRNA: 3'- aCUggCCgCCCCUCUC------CUGCG-CGCCC- -5' |
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29503 | 5' | -63.8 | NC_006151.1 | + | 10439 | 0.85 | 0.034582 |
Target: 5'- aGGCCGGCGGGGAgggaggaggagGAGGACGCgGCGGcGg -3' miRNA: 3'- aCUGGCCGCCCCU-----------CUCCUGCG-CGCC-C- -5' |
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29503 | 5' | -63.8 | NC_006151.1 | + | 10914 | 0.66 | 0.583494 |
Target: 5'- gGACCGGgguCGGGcccacggcgccgaGGGuGGGCGCGCGu- -3' miRNA: 3'- aCUGGCC---GCCC-------------CUCuCCUGCGCGCcc -5' |
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29503 | 5' | -63.8 | NC_006151.1 | + | 11040 | 0.68 | 0.447435 |
Target: 5'- cGGCCGGCcGGGGGcccggccuGGACGCG-GGc -3' miRNA: 3'- aCUGGCCGcCCCUCu-------CCUGCGCgCCc -5' |
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29503 | 5' | -63.8 | NC_006151.1 | + | 11711 | 0.7 | 0.344404 |
Target: 5'- cGugCGGCGcGGaacGAGAGGGgGgaGCGGGg -3' miRNA: 3'- aCugGCCGC-CC---CUCUCCUgCg-CGCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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