miRNA display CGI


Results 41 - 60 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29504 5' -57.3 NC_006151.1 + 19058 0.67 0.811877
Target:  5'- gGGCGC-AGGCacucgGGCGcgCGCGGGuGGu -3'
miRNA:   3'- gUCGUGcUCCGa----CCGCaaGUGCUC-CC- -5'
29504 5' -57.3 NC_006151.1 + 54646 0.67 0.81101
Target:  5'- gCGGCGCGAGcGCUGcGUGgacgagCACGAccuggccGGGc -3'
miRNA:   3'- -GUCGUGCUC-CGAC-CGCaa----GUGCU-------CCC- -5'
29504 5' -57.3 NC_006151.1 + 101210 0.67 0.803136
Target:  5'- -uGCGCGAgGGCcaGGCGUggACGGGGc -3'
miRNA:   3'- guCGUGCU-CCGa-CCGCAagUGCUCCc -5'
29504 5' -57.3 NC_006151.1 + 73020 0.67 0.803136
Target:  5'- -cGCuGCGAGGCccagggauUGGCGguggCGCGGuGGGg -3'
miRNA:   3'- guCG-UGCUCCG--------ACCGCaa--GUGCU-CCC- -5'
29504 5' -57.3 NC_006151.1 + 10433 0.67 0.803136
Target:  5'- gGGC-CGAGGCcGGCGgg---GAGGGa -3'
miRNA:   3'- gUCGuGCUCCGaCCGCaagugCUCCC- -5'
29504 5' -57.3 NC_006151.1 + 80036 0.67 0.803136
Target:  5'- gGGgACGGGGgaGGCGggagUCugGcuguGGGa -3'
miRNA:   3'- gUCgUGCUCCgaCCGCa---AGugCu---CCC- -5'
29504 5' -57.3 NC_006151.1 + 111330 0.67 0.797817
Target:  5'- gGGCACGggcgagaugacggucGGGCggaugGGCGcgCgggGCGAGGGc -3'
miRNA:   3'- gUCGUGC---------------UCCGa----CCGCaaG---UGCUCCC- -5'
29504 5' -57.3 NC_006151.1 + 49602 0.67 0.794242
Target:  5'- cCAGCGCGcugccGGUccUGGCGgugcugCGCGAGuGGg -3'
miRNA:   3'- -GUCGUGCu----CCG--ACCGCaa----GUGCUC-CC- -5'
29504 5' -57.3 NC_006151.1 + 97360 0.67 0.794242
Target:  5'- aGGcCGCGGcGGC-GGCGggCGCGGcGGGg -3'
miRNA:   3'- gUC-GUGCU-CCGaCCGCaaGUGCU-CCC- -5'
29504 5' -57.3 NC_006151.1 + 99479 0.67 0.794242
Target:  5'- gCGGCGCuGGGGCUccccgagaagGGCGUggagCACGuGGu -3'
miRNA:   3'- -GUCGUG-CUCCGA----------CCGCAa---GUGCuCCc -5'
29504 5' -57.3 NC_006151.1 + 129762 0.67 0.794242
Target:  5'- cCAGCGCGaAGGCgacgagGGCGUcgcUCccgccgGCGuGGGc -3'
miRNA:   3'- -GUCGUGC-UCCGa-----CCGCA---AG------UGCuCCC- -5'
29504 5' -57.3 NC_006151.1 + 96863 0.67 0.794242
Target:  5'- -cGCGCccgccGGGCgcGGCGcgCGCGGGGGc -3'
miRNA:   3'- guCGUGc----UCCGa-CCGCaaGUGCUCCC- -5'
29504 5' -57.3 NC_006151.1 + 127443 0.67 0.785205
Target:  5'- -uGCGCGAGaGCcGGCGgcgCACGAagcgcuGGGc -3'
miRNA:   3'- guCGUGCUC-CGaCCGCaa-GUGCU------CCC- -5'
29504 5' -57.3 NC_006151.1 + 135121 0.67 0.785205
Target:  5'- -cGCGCGGGGCgGGC-UggGCGGGGa -3'
miRNA:   3'- guCGUGCUCCGaCCGcAagUGCUCCc -5'
29504 5' -57.3 NC_006151.1 + 84387 0.67 0.785205
Target:  5'- -cGCGCGGGGacgGGCGgggaGCGGGuGGg -3'
miRNA:   3'- guCGUGCUCCga-CCGCaag-UGCUC-CC- -5'
29504 5' -57.3 NC_006151.1 + 29609 0.68 0.776033
Target:  5'- gCGGCG-GGGGCUGGUGUgggaggagUGGGGGa -3'
miRNA:   3'- -GUCGUgCUCCGACCGCAagu-----GCUCCC- -5'
29504 5' -57.3 NC_006151.1 + 90744 0.68 0.766735
Target:  5'- gCGGCGCccucgGGGGC-GGCGggCACGGuggcGGGg -3'
miRNA:   3'- -GUCGUG-----CUCCGaCCGCaaGUGCU----CCC- -5'
29504 5' -57.3 NC_006151.1 + 22868 0.68 0.766735
Target:  5'- gCAGgGCGGGGCUgccGGUGggggUCACGAagaugucagaGGGc -3'
miRNA:   3'- -GUCgUGCUCCGA---CCGCa---AGUGCU----------CCC- -5'
29504 5' -57.3 NC_006151.1 + 121411 0.68 0.757319
Target:  5'- gCGGCGCG-GGCggGGaCG-UCGCGGGGc -3'
miRNA:   3'- -GUCGUGCuCCGa-CC-GCaAGUGCUCCc -5'
29504 5' -57.3 NC_006151.1 + 70919 0.68 0.757319
Target:  5'- uGGCGCGcGuGCUGGCGcugCACGAcGGc -3'
miRNA:   3'- gUCGUGCuC-CGACCGCaa-GUGCUcCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.