Results 1 - 20 of 117 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29504 | 5' | -57.3 | NC_006151.1 | + | 3356 | 0.67 | 0.820459 |
Target: 5'- gGGCGCG-GGCcaccucgGGCGggCaguaggcgGCGAGGGc -3' miRNA: 3'- gUCGUGCuCCGa------CCGCaaG--------UGCUCCC- -5' |
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29504 | 5' | -57.3 | NC_006151.1 | + | 3817 | 0.73 | 0.480282 |
Target: 5'- gAGCugGAcuugGuGCUGGCGgggCugGAGGGc -3' miRNA: 3'- gUCGugCU----C-CGACCGCaa-GugCUCCC- -5' |
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29504 | 5' | -57.3 | NC_006151.1 | + | 4177 | 0.72 | 0.541928 |
Target: 5'- gCAGCGCggccgucaccuccucGAGGCaGGCGggCcCGAGGGc -3' miRNA: 3'- -GUCGUG---------------CUCCGaCCGCaaGuGCUCCC- -5' |
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29504 | 5' | -57.3 | NC_006151.1 | + | 4218 | 0.7 | 0.628264 |
Target: 5'- gCGGC-CGGGGCgcgGGCGggCGCGGGc- -3' miRNA: 3'- -GUCGuGCUCCGa--CCGCaaGUGCUCcc -5' |
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29504 | 5' | -57.3 | NC_006151.1 | + | 5243 | 0.67 | 0.820459 |
Target: 5'- -cGCGCGGcGGC-GGCGggggCcCGGGGGg -3' miRNA: 3'- guCGUGCU-CCGaCCGCaa--GuGCUCCC- -5' |
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29504 | 5' | -57.3 | NC_006151.1 | + | 5360 | 0.67 | 0.811877 |
Target: 5'- cCGGCGCGGcGCcGGCGgggcugUCucuGCGGGGGc -3' miRNA: 3'- -GUCGUGCUcCGaCCGCa-----AG---UGCUCCC- -5' |
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29504 | 5' | -57.3 | NC_006151.1 | + | 8077 | 0.72 | 0.547853 |
Target: 5'- uGGCgACGGGGCgUGGCGgggcgUgGCaGAGGGg -3' miRNA: 3'- gUCG-UGCUCCG-ACCGCa----AgUG-CUCCC- -5' |
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29504 | 5' | -57.3 | NC_006151.1 | + | 10433 | 0.67 | 0.803136 |
Target: 5'- gGGC-CGAGGCcGGCGgg---GAGGGa -3' miRNA: 3'- gUCGuGCUCCGaCCGCaagugCUCCC- -5' |
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29504 | 5' | -57.3 | NC_006151.1 | + | 14475 | 0.68 | 0.73817 |
Target: 5'- gGGCGgGuGGGCgggugGGCGggggUCGgGAGGGa -3' miRNA: 3'- gUCGUgC-UCCGa----CCGCa---AGUgCUCCC- -5' |
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29504 | 5' | -57.3 | NC_006151.1 | + | 19058 | 0.67 | 0.811877 |
Target: 5'- gGGCGC-AGGCacucgGGCGcgCGCGGGuGGu -3' miRNA: 3'- gUCGUGcUCCGa----CCGCaaGUGCUC-CC- -5' |
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29504 | 5' | -57.3 | NC_006151.1 | + | 20120 | 0.75 | 0.367056 |
Target: 5'- cCGGCgACGGGGCUGGgGggcgggcgcCGCGGGGGc -3' miRNA: 3'- -GUCG-UGCUCCGACCgCaa-------GUGCUCCC- -5' |
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29504 | 5' | -57.3 | NC_006151.1 | + | 20455 | 0.68 | 0.73817 |
Target: 5'- gGGCuCGGGGgUGGCGccggUCcccCGGGGGg -3' miRNA: 3'- gUCGuGCUCCgACCGCa---AGu--GCUCCC- -5' |
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29504 | 5' | -57.3 | NC_006151.1 | + | 20809 | 0.66 | 0.85303 |
Target: 5'- aCAGcCGCGgaAGGCcucgUGGUGcaCGCGGGGGc -3' miRNA: 3'- -GUC-GUGC--UCCG----ACCGCaaGUGCUCCC- -5' |
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29504 | 5' | -57.3 | NC_006151.1 | + | 21318 | 0.66 | 0.85303 |
Target: 5'- uGGCGCGAGacGCccGGCGcg-GCGGGGGu -3' miRNA: 3'- gUCGUGCUC--CGa-CCGCaagUGCUCCC- -5' |
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29504 | 5' | -57.3 | NC_006151.1 | + | 21386 | 0.72 | 0.547853 |
Target: 5'- gGGCACGAcGGCcGGCGgg-GCGaAGGGg -3' miRNA: 3'- gUCGUGCU-CCGaCCGCaagUGC-UCCC- -5' |
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29504 | 5' | -57.3 | NC_006151.1 | + | 21494 | 0.66 | 0.85303 |
Target: 5'- gCGGcCGgGGGGCgcgGGCG-UCACcGGGGc -3' miRNA: 3'- -GUC-GUgCUCCGa--CCGCaAGUGcUCCC- -5' |
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29504 | 5' | -57.3 | NC_006151.1 | + | 22868 | 0.68 | 0.766735 |
Target: 5'- gCAGgGCGGGGCUgccGGUGggggUCACGAagaugucagaGGGc -3' miRNA: 3'- -GUCgUGCUCCGA---CCGCa---AGUGCU----------CCC- -5' |
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29504 | 5' | -57.3 | NC_006151.1 | + | 23602 | 1.09 | 0.002175 |
Target: 5'- gCAGCACGAGGCUGGCGUUCACGAGGGc -3' miRNA: 3'- -GUCGUGCUCCGACCGCAAGUGCUCCC- -5' |
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29504 | 5' | -57.3 | NC_006151.1 | + | 23846 | 0.73 | 0.489701 |
Target: 5'- gCAGcCGCGAGaGUaguccgucccggUGGCGUUgGCGGGGGc -3' miRNA: 3'- -GUC-GUGCUC-CG------------ACCGCAAgUGCUCCC- -5' |
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29504 | 5' | -57.3 | NC_006151.1 | + | 26325 | 0.75 | 0.367056 |
Target: 5'- aCAGCGCGGGGCgaGGCccgccUCACGGGGcGg -3' miRNA: 3'- -GUCGUGCUCCGa-CCGca---AGUGCUCC-C- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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