miRNA display CGI


Results 1 - 20 of 117 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29504 5' -57.3 NC_006151.1 + 23602 1.09 0.002175
Target:  5'- gCAGCACGAGGCUGGCGUUCACGAGGGc -3'
miRNA:   3'- -GUCGUGCUCCGACCGCAAGUGCUCCC- -5'
29504 5' -57.3 NC_006151.1 + 34618 0.82 0.137339
Target:  5'- gAGCGCGAGGCgcggguggGGCGacCGCGGGGGu -3'
miRNA:   3'- gUCGUGCUCCGa-------CCGCaaGUGCUCCC- -5'
29504 5' -57.3 NC_006151.1 + 110790 0.77 0.300151
Target:  5'- -cGCGCGGGGCUagGGCGggggGCGAGGGc -3'
miRNA:   3'- guCGUGCUCCGA--CCGCaag-UGCUCCC- -5'
29504 5' -57.3 NC_006151.1 + 20120 0.75 0.367056
Target:  5'- cCGGCgACGGGGCUGGgGggcgggcgcCGCGGGGGc -3'
miRNA:   3'- -GUCG-UGCUCCGACCgCaa-------GUGCUCCC- -5'
29504 5' -57.3 NC_006151.1 + 139624 0.75 0.367056
Target:  5'- gCGGCugGGGGCcauccGGCGccggCGCGGGGGu -3'
miRNA:   3'- -GUCGugCUCCGa----CCGCaa--GUGCUCCC- -5'
29504 5' -57.3 NC_006151.1 + 26325 0.75 0.367056
Target:  5'- aCAGCGCGGGGCgaGGCccgccUCACGGGGcGg -3'
miRNA:   3'- -GUCGUGCUCCGa-CCGca---AGUGCUCC-C- -5'
29504 5' -57.3 NC_006151.1 + 91154 0.74 0.409276
Target:  5'- gGGCGCGAGaGCgucaggcucacgucgGGCGccCGCGAGGGg -3'
miRNA:   3'- gUCGUGCUC-CGa--------------CCGCaaGUGCUCCC- -5'
29504 5' -57.3 NC_006151.1 + 33218 0.74 0.417035
Target:  5'- gAGCACGcgGGGCgccccGGCGggCGgGAGGGg -3'
miRNA:   3'- gUCGUGC--UCCGa----CCGCaaGUgCUCCC- -5'
29504 5' -57.3 NC_006151.1 + 60740 0.74 0.425761
Target:  5'- gAGCACGAGGCagcGGCGgcUCGCGAaGGc -3'
miRNA:   3'- gUCGUGCUCCGa--CCGCa-AGUGCUcCC- -5'
29504 5' -57.3 NC_006151.1 + 82674 0.73 0.461715
Target:  5'- gCGGCGCGccgcGGGCgagGGCGgcggccccCGCGAGGGc -3'
miRNA:   3'- -GUCGUGC----UCCGa--CCGCaa------GUGCUCCC- -5'
29504 5' -57.3 NC_006151.1 + 29412 0.73 0.470952
Target:  5'- -cGCGCGgagaAGGCUcGGUGUggcCGCGGGGGg -3'
miRNA:   3'- guCGUGC----UCCGA-CCGCAa--GUGCUCCC- -5'
29504 5' -57.3 NC_006151.1 + 3817 0.73 0.480282
Target:  5'- gAGCugGAcuugGuGCUGGCGgggCugGAGGGc -3'
miRNA:   3'- gUCGugCU----C-CGACCGCaa-GugCUCCC- -5'
29504 5' -57.3 NC_006151.1 + 75391 0.73 0.489701
Target:  5'- aCGGCGCGGGGCggGuGCGUgCGCGGguccGGGa -3'
miRNA:   3'- -GUCGUGCUCCGa-C-CGCAaGUGCU----CCC- -5'
29504 5' -57.3 NC_006151.1 + 23846 0.73 0.489701
Target:  5'- gCAGcCGCGAGaGUaguccgucccggUGGCGUUgGCGGGGGc -3'
miRNA:   3'- -GUC-GUGCUC-CG------------ACCGCAAgUGCUCCC- -5'
29504 5' -57.3 NC_006151.1 + 61783 0.72 0.498251
Target:  5'- gCGGCGCGAggccggccGGCUGGCGUUCcagcccaGCGuGGu -3'
miRNA:   3'- -GUCGUGCU--------CCGACCGCAAG-------UGCuCCc -5'
29504 5' -57.3 NC_006151.1 + 63166 0.72 0.499206
Target:  5'- gCGGUACGGGGCcuUGGgGcgCACGGGGc -3'
miRNA:   3'- -GUCGUGCUCCG--ACCgCaaGUGCUCCc -5'
29504 5' -57.3 NC_006151.1 + 74122 0.72 0.499206
Target:  5'- gGGCACGAGGUUGcGCGggugCAgcgggugcCGGGGGu -3'
miRNA:   3'- gUCGUGCUCCGAC-CGCaa--GU--------GCUCCC- -5'
29504 5' -57.3 NC_006151.1 + 96588 0.72 0.50303
Target:  5'- gCGGCGCGAGGCgccgGGCGcgggcgcgccgacgUCGugccCGAGGGc -3'
miRNA:   3'- -GUCGUGCUCCGa---CCGCa-------------AGU----GCUCCC- -5'
29504 5' -57.3 NC_006151.1 + 133471 0.72 0.508792
Target:  5'- aGGCccGCGAGGCggccgcgGGCGUcaccuuggcggCGCGGGGGg -3'
miRNA:   3'- gUCG--UGCUCCGa------CCGCAa----------GUGCUCCC- -5'
29504 5' -57.3 NC_006151.1 + 130946 0.72 0.518454
Target:  5'- gCGGCGgGGGGUcGcGCGggCGCGGGGGc -3'
miRNA:   3'- -GUCGUgCUCCGaC-CGCaaGUGCUCCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.