miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29504 5' -57.3 NC_006151.1 + 3356 0.67 0.820459
Target:  5'- gGGCGCG-GGCcaccucgGGCGggCaguaggcgGCGAGGGc -3'
miRNA:   3'- gUCGUGCuCCGa------CCGCaaG--------UGCUCCC- -5'
29504 5' -57.3 NC_006151.1 + 3817 0.73 0.480282
Target:  5'- gAGCugGAcuugGuGCUGGCGgggCugGAGGGc -3'
miRNA:   3'- gUCGugCU----C-CGACCGCaa-GugCUCCC- -5'
29504 5' -57.3 NC_006151.1 + 4177 0.72 0.541928
Target:  5'- gCAGCGCggccgucaccuccucGAGGCaGGCGggCcCGAGGGc -3'
miRNA:   3'- -GUCGUG---------------CUCCGaCCGCaaGuGCUCCC- -5'
29504 5' -57.3 NC_006151.1 + 4218 0.7 0.628264
Target:  5'- gCGGC-CGGGGCgcgGGCGggCGCGGGc- -3'
miRNA:   3'- -GUCGuGCUCCGa--CCGCaaGUGCUCcc -5'
29504 5' -57.3 NC_006151.1 + 5243 0.67 0.820459
Target:  5'- -cGCGCGGcGGC-GGCGggggCcCGGGGGg -3'
miRNA:   3'- guCGUGCU-CCGaCCGCaa--GuGCUCCC- -5'
29504 5' -57.3 NC_006151.1 + 5360 0.67 0.811877
Target:  5'- cCGGCGCGGcGCcGGCGgggcugUCucuGCGGGGGc -3'
miRNA:   3'- -GUCGUGCUcCGaCCGCa-----AG---UGCUCCC- -5'
29504 5' -57.3 NC_006151.1 + 8077 0.72 0.547853
Target:  5'- uGGCgACGGGGCgUGGCGgggcgUgGCaGAGGGg -3'
miRNA:   3'- gUCG-UGCUCCG-ACCGCa----AgUG-CUCCC- -5'
29504 5' -57.3 NC_006151.1 + 10433 0.67 0.803136
Target:  5'- gGGC-CGAGGCcGGCGgg---GAGGGa -3'
miRNA:   3'- gUCGuGCUCCGaCCGCaagugCUCCC- -5'
29504 5' -57.3 NC_006151.1 + 14475 0.68 0.73817
Target:  5'- gGGCGgGuGGGCgggugGGCGggggUCGgGAGGGa -3'
miRNA:   3'- gUCGUgC-UCCGa----CCGCa---AGUgCUCCC- -5'
29504 5' -57.3 NC_006151.1 + 19058 0.67 0.811877
Target:  5'- gGGCGC-AGGCacucgGGCGcgCGCGGGuGGu -3'
miRNA:   3'- gUCGUGcUCCGa----CCGCaaGUGCUC-CC- -5'
29504 5' -57.3 NC_006151.1 + 20120 0.75 0.367056
Target:  5'- cCGGCgACGGGGCUGGgGggcgggcgcCGCGGGGGc -3'
miRNA:   3'- -GUCG-UGCUCCGACCgCaa-------GUGCUCCC- -5'
29504 5' -57.3 NC_006151.1 + 20455 0.68 0.73817
Target:  5'- gGGCuCGGGGgUGGCGccggUCcccCGGGGGg -3'
miRNA:   3'- gUCGuGCUCCgACCGCa---AGu--GCUCCC- -5'
29504 5' -57.3 NC_006151.1 + 20809 0.66 0.85303
Target:  5'- aCAGcCGCGgaAGGCcucgUGGUGcaCGCGGGGGc -3'
miRNA:   3'- -GUC-GUGC--UCCG----ACCGCaaGUGCUCCC- -5'
29504 5' -57.3 NC_006151.1 + 21318 0.66 0.85303
Target:  5'- uGGCGCGAGacGCccGGCGcg-GCGGGGGu -3'
miRNA:   3'- gUCGUGCUC--CGa-CCGCaagUGCUCCC- -5'
29504 5' -57.3 NC_006151.1 + 21386 0.72 0.547853
Target:  5'- gGGCACGAcGGCcGGCGgg-GCGaAGGGg -3'
miRNA:   3'- gUCGUGCU-CCGaCCGCaagUGC-UCCC- -5'
29504 5' -57.3 NC_006151.1 + 21494 0.66 0.85303
Target:  5'- gCGGcCGgGGGGCgcgGGCG-UCACcGGGGc -3'
miRNA:   3'- -GUC-GUgCUCCGa--CCGCaAGUGcUCCC- -5'
29504 5' -57.3 NC_006151.1 + 22868 0.68 0.766735
Target:  5'- gCAGgGCGGGGCUgccGGUGggggUCACGAagaugucagaGGGc -3'
miRNA:   3'- -GUCgUGCUCCGA---CCGCa---AGUGCU----------CCC- -5'
29504 5' -57.3 NC_006151.1 + 23602 1.09 0.002175
Target:  5'- gCAGCACGAGGCUGGCGUUCACGAGGGc -3'
miRNA:   3'- -GUCGUGCUCCGACCGCAAGUGCUCCC- -5'
29504 5' -57.3 NC_006151.1 + 23846 0.73 0.489701
Target:  5'- gCAGcCGCGAGaGUaguccgucccggUGGCGUUgGCGGGGGc -3'
miRNA:   3'- -GUC-GUGCUC-CG------------ACCGCAAgUGCUCCC- -5'
29504 5' -57.3 NC_006151.1 + 26325 0.75 0.367056
Target:  5'- aCAGCGCGGGGCgaGGCccgccUCACGGGGcGg -3'
miRNA:   3'- -GUCGUGCUCCGa-CCGca---AGUGCUCC-C- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.